Analysis of interatomic Contacts of Structural Units in PDB entry:
4C8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4C8D entry

There is 1 chain in PDB entry 4C8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 1380PHE 1720
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4C8D. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1400 1411Right-handed alpha
Helix 2
2
A
1419 1424Right-handed 310
Helix 3
3
A
1425 1429Right-handed 310
Helix 4
4
A
1430 1439Right-handed alpha
Helix 5
5
A
1459 1465Right-handed alpha
Helix 6
6
A
1469 1472Right-handed 310
Helix 7
7
A
1492 1498Right-handed alpha
Helix 8
8
A
1498 1509Right-handed alpha
Helix 9
9
A
1511 1516Right-handed alpha
Helix 10
10
A
1549 1554Right-handed 310
Helix 11
11
A
1582 1593Right-handed alpha
Helix 12
12
A
1596 1605Right-handed alpha
Helix 13
13
A
1618 1620Right-handed 310
Helix 14
14
A
1621 1635Right-handed alpha
Helix 15
15
A
1645 1650Right-handed alpha
Helix 16
16
A
1655 1667Right-handed alpha
Helix 17
17
A
1706 1708Right-handed 310
Helix 18
18
A
1709 1720Right-handed alpha
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There are 3 sheets in PDB entry 4C8D. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1382 1385first strand
Strand 2
A
1390 1393anti-parallel
Strand 3
A
1415 1417parallel
Strand 4
A
1680 1683anti-parallel
Strand 5
A
1565 1574anti-parallel
Strand 6
A
1696 1704anti-parallel
Strand 7
A
1539 1543anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1453 1458first strand
Strand 2
A
1442 1447anti-parallel
Strand 3
A
1483 1485anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1557 1560first strand
Strand 2
A
1689 1693anti-parallel
Strand 3
A
1610 1616anti-parallel
Strand 4
A
1671 1676anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il