Analysis of interatomic Contacts of Structural Units in PDB entry:
4CDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CDC entry

There are 11 chains in PDB entry 4CDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 1GLY 119
B
HIS 206THR 367
C
PRO 372LEU 439
D
ASP 1VAL 118
E
HIS 206THR 367
F
PRO 372LEU 439
G
ASP 1GLY 119
H
HIS 206THR 367
I
PRO 372LEU 439
J
ASP 1GLY 119
K
HIS 206TYR 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 4CDC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
7 12Right-handed alpha
Helix 2
2
B
233 252Right-handed alpha
Helix 3
3
B
260 268Right-handed alpha
Helix 4
4
B
272 274Right-handed 310
Helix 5
5
B
278 283Right-handed alpha
Helix 6
6
B
284 290Right-handed alpha
Helix 7
7
B
332 344Right-handed alpha
Helix 8
8
B
353 358Right-handed alpha
Helix 9
9
C
422 426Right-handed 310
Helix 10
10
D
7 12Right-handed alpha
Helix 11
11
E
233 251Right-handed alpha
Helix 12
12
E
260 268Right-handed alpha
Helix 13
13
E
272 274Right-handed 310
Helix 14
14
E
278 283Right-handed alpha
Helix 15
15
E
284 290Right-handed alpha
Helix 16
16
E
295 298Right-handed 310
Helix 17
17
E
332 344Right-handed alpha
Helix 18
18
E
353 359Right-handed 310
Helix 19
19
F
422 426Right-handed 310
Helix 20
20
G
7 12Right-handed alpha
Helix 21
21
G
29 33Right-handed 310
Helix 22
22
H
233 251Right-handed alpha
Helix 23
23
H
260 268Right-handed alpha
Helix 24
24
H
272 274Right-handed 310
Helix 25
25
H
278 283Right-handed alpha
Helix 26
26
H
284 290Right-handed alpha
Helix 27
27
H
295 298Right-handed 310
Helix 28
28
H
332 344Right-handed alpha
Helix 29
29
H
353 358Right-handed alpha
Helix 30
30
I
422 426Right-handed 310
Helix 31
31
J
7 12Right-handed alpha
Helix 32
32
K
233 251Right-handed alpha
Helix 33
33
K
260 268Right-handed alpha
Helix 34
34
K
272 274Right-handed 310
Helix 35
35
K
278 283Right-handed alpha
Helix 36
36
K
284 290Right-handed alpha
Helix 37
37
K
332 344Right-handed alpha
Helix 38
38
K
353 359Right-handed 310
Helix 39
39
L
422 426Right-handed 310
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There are 24 sheets in PDB entry 4CDC. Click on sheet of interest to get list of strands forming it: AA, BA, BB, BC, BD, BE, DA, EA, EB, EC, ED, EE, GA, HA, HB, HC, HD, HE, JA, KA, KB, KC, KD, KE,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
13 24first strand
Strand 2
A
36 45anti-parallel
Strand 3
A
49 51anti-parallel
Strand 4
A
57 63anti-parallel
Strand 5
A
67 72anti-parallel
Strand 6
A
75 83anti-parallel
Strand 7
A
92 97anti-parallel
Strand 8
A
110 117parallel
Strand 9
A
13 24first strand
Strand 10
B
211 212first strand
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
381 390parallel
Strand 2
B
346 350first strand
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
381 390anti-parallel
Strand 2
B
363 364first strand
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
414 418parallel
Strand 2
C
397 402anti-parallel
Strand 3
C
381 390anti-parallel
Strand 4
B
346 350anti-parallel
Strand 5
B
363 364first strand
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
414 418parallel
Strand 2
C
397 402anti-parallel
Strand 3
C
381 390anti-parallel
Strand 4
B
211 212parallel
Strand 5
B
318 323first strand
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
431 435anti-parallel
Strand 2
D
13 24first strand
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There are 10 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
38 45anti-parallel
Strand 2
D
49 52anti-parallel
Strand 3
D
57 63anti-parallel
Strand 4
D
67 72anti-parallel
Strand 5
D
75 84anti-parallel
Strand 6
D
91 97anti-parallel
Strand 7
D
110 117parallel
Strand 8
D
13 24parallel
Strand 9
E
211 212first strand
Strand 10
F
381 390parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
346 350first strand
Strand 2
F
381 390anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
363 364first strand
Strand 2
F
414 418parallel
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There are 5 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
397 402anti-parallel
Strand 2
F
381 390anti-parallel
Strand 3
E
346 350anti-parallel
Strand 4
E
363 364first strand
Strand 5
F
414 418parallel
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There are 5 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
397 402anti-parallel
Strand 2
F
381 390anti-parallel
Strand 3
E
211 212parallel
Strand 4
E
318 323first strand
Strand 5
F
431 435anti-parallel
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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
13 24first strand
Strand 2
G
36 45anti-parallel
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There are 10 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
49 52anti-parallel
Strand 2
G
57 63anti-parallel
Strand 3
G
67 72anti-parallel
Strand 4
G
75 83anti-parallel
Strand 5
G
92 97anti-parallel
Strand 6
G
110 117parallel
Strand 7
G
13 24parallel
Strand 8
H
211 212first strand
Strand 9
I
381 390parallel
Strand 10
H
346 350first strand
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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
381 390anti-parallel
Strand 2
H
363 364first strand
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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
414 418parallel
Strand 2
I
397 402anti-parallel
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There are 5 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
381 390anti-parallel
Strand 2
H
346 350anti-parallel
Strand 3
H
363 364first strand
Strand 4
I
414 418parallel
Strand 5
I
397 402anti-parallel
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There are 5 strands in HD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
381 390anti-parallel
Strand 2
H
211 212parallel
Strand 3
H
318 323first strand
Strand 4
I
431 435anti-parallel
Strand 5
J
13 24first strand
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There are 2 strands in HE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
36 45anti-parallel
Strand 2
J
49 51anti-parallel
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There are 10 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
57 63anti-parallel
Strand 2
J
67 72anti-parallel
Strand 3
J
75 83anti-parallel
Strand 4
J
92 97anti-parallel
Strand 5
J
110 119parallel
Strand 6
J
13 24parallel
Strand 7
K
211 212first strand
Strand 8
L
381 390parallel
Strand 9
K
346 350first strand
Strand 10
L
381 390anti-parallel
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There are 2 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
363 364first strand
Strand 2
L
414 418parallel
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There are 2 strands in KB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
397 402anti-parallel
Strand 2
L
381 390anti-parallel
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There are 5 strands in KC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
346 350anti-parallel
Strand 2
K
363 364first strand
Strand 3
L
414 418parallel
Strand 4
L
397 402anti-parallel
Strand 5
L
381 390anti-parallel
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There are 5 strands in KD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
211 212parallel
Strand 2
K
317 323first strand
Strand 3
L
431 436anti-parallel
Strand 4

0 0first strand
Strand 5

0 0first strand
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There are 2 strands in KE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1

0 0first strand
Strand 2

0 0first strand
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