Analysis of interatomic Contacts of Structural Units in PDB entry:
4D2T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D2T entry

There are 4 chains in PDB entry 4D2T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 333
B
 HIS 0ARG 333
C
 MET 1ARG 333
D
 ASP 3GLN 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 4D2T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 64Right-handed alpha
Helix 2
2
A
93 102Right-handed alpha
Helix 3
3
A
105 126Right-handed alpha
Helix 4
4
A
171 175Right-handed 310
Helix 5
5
A
176 181Right-handed alpha
Helix 6
6
A
188 205Right-handed alpha
Helix 7
7
A
213 224Right-handed alpha
Helix 8
8
A
233 244Right-handed alpha
Helix 9
9
A
253 259Right-handed alpha
Helix 10
10
A
260 265Right-handed alpha
Helix 11
11
A
283 295Right-handed alpha
Helix 12
12
A
301 306Right-handed alpha
Helix 13
13
A
311 326Right-handed alpha
Helix 14
14
B
50 62Right-handed alpha
Helix 15
15
B
93 101Right-handed alpha
Helix 16
16
B
105 126Right-handed alpha
Helix 17
17
B
171 175Right-handed 310
Helix 18
18
B
176 181Right-handed alpha
Helix 19
19
B
188 205Right-handed alpha
Helix 20
20
B
213 224Right-handed alpha
Helix 21
21
B
233 244Right-handed alpha
Helix 22
22
B
253 259Right-handed alpha
Helix 23
23
B
260 265Right-handed alpha
Helix 24
24
B
283 295Right-handed alpha
Helix 25
25
B
297 306Right-handed alpha
Helix 26
26
B
311 327Right-handed alpha
Helix 27
27
C
1 5Right-handed 310
Helix 28
28
C
51 64Right-handed alpha
Helix 29
29
C
93 101Right-handed alpha
Helix 30
30
C
105 126Right-handed alpha
Helix 31
31
C
171 175Right-handed 310
Helix 32
32
C
176 181Right-handed alpha
Helix 33
33
C
188 205Right-handed alpha
Helix 34
34
C
213 224Right-handed alpha
Helix 35
35
C
233 244Right-handed alpha
Helix 36
36
C
253 259Right-handed alpha
Helix 37
37
C
260 265Right-handed alpha
Helix 38
38
C
286 295Right-handed alpha
Helix 39
39
C
301 306Right-handed alpha
Helix 40
40
C
311 325Right-handed alpha
Helix 41
41
D
47 49Right-handed 310
Helix 42
42
D
50 64Right-handed alpha
Helix 43
43
D
93 101Right-handed alpha
Helix 44
44
D
105 126Right-handed alpha
Helix 45
45
D
171 175Right-handed 310
Helix 46
46
D
176 182Right-handed alpha
Helix 47
47
D
188 205Right-handed alpha
Helix 48
48
D
213 224Right-handed alpha
Helix 49
49
D
233 244Right-handed alpha
Helix 50
50
D
253 259Right-handed alpha
Helix 51
51
D
260 265Right-handed alpha
Helix 52
52
D
284 293Right-handed alpha
Helix 53
53
D
311 326Right-handed alpha
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There are 8 sheets in PDB entry 4D2T. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 29first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
81 87anti-parallel
Strand 4
A
72 77anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
146 148anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 16first strand
Strand 2
B
24 30anti-parallel
Strand 3
B
36 43anti-parallel
Strand 4
B
81 87anti-parallel
Strand 5
B
72 77anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 140first strand
Strand 2
B
146 148anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
24 30anti-parallel
Strand 3
C
36 43anti-parallel
Strand 4
C
81 87anti-parallel
Strand 5
C
72 75anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
138 141first strand
Strand 2
C
145 148anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 16first strand
Strand 2
D
24 30anti-parallel
Strand 3
D
36 43anti-parallel
Strand 4
D
81 87anti-parallel
Strand 5
D
72 76anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
138 140first strand
Strand 2
D
146 148anti-parallel
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