Analysis of interatomic Contacts of Structural Units in PDB entry:
4DAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DAJ entry

There are 4 chains in PDB entry 4DAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 64THR 556
B
THR 63THR 556
C
THR 63THR 556
D
TRP 65LEU 559
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 4DAJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
64 95Right-handed alpha
Helix 2
2
A
96 99Right-handed 310
Helix 3
3
A
100 119Right-handed alpha
Helix 4
4
A
119 131Right-handed alpha
Helix 5
5
A
136 171Right-handed alpha
Helix 6
6
A
180 211Right-handed alpha
Helix 7
7
A
222 226Right-handed 310
Helix 8
8
A
227 239Right-handed alpha
Helix 9
9
A
239 257Right-handed alpha
Helix 10
10
A
258 1012Right-handed alpha
Helix 11
11
A
1038 1051Right-handed alpha
Helix 12
12
A
1059 1081Right-handed alpha
Helix 13
13
A
1083 1090Right-handed alpha
Helix 14
14
A
1092 1107Right-handed alpha
Helix 15
15
A
1107 1112Right-handed alpha
Helix 16
16
A
1114 1123Right-handed alpha
Helix 17
17
A
1125 1135Right-handed alpha
Helix 18
18
A
1136 1142Right-handed alpha
Helix 19
19
A
1142 1156Right-handed alpha
Helix 20
20
A
1157 1161Right-handed 310
Helix 21
21
A
491 516Right-handed alpha
Helix 22
22
A
521 547Right-handed alpha
Helix 23
23
A
547 556Right-handed alpha
Helix 24
24
B
64 95Right-handed alpha
Helix 25
25
B
100 119Right-handed alpha
Helix 26
26
B
119 130Right-handed alpha
Helix 27
27
B
137 171Right-handed alpha
Helix 28
28
B
180 211Right-handed alpha
Helix 29
29
B
222 226Right-handed 310
Helix 30
30
B
227 239Right-handed alpha
Helix 31
31
B
239 256Right-handed alpha
Helix 32
32
B
257 1012Right-handed alpha
Helix 33
33
B
1038 1051Right-handed alpha
Helix 34
34
B
1059 1081Right-handed alpha
Helix 35
35
B
1083 1091Right-handed alpha
Helix 36
36
B
1092 1106Right-handed alpha
Helix 37
37
B
1107 1112Right-handed alpha
Helix 38
38
B
1114 1123Right-handed alpha
Helix 39
39
B
1126 1135Right-handed alpha
Helix 40
40
B
1136 1142Right-handed alpha
Helix 41
41
B
1142 1156Right-handed alpha
Helix 42
42
B
1157 1161Right-handed 310
Helix 43
43
B
491 514Right-handed alpha
Helix 44
44
B
521 547Right-handed alpha
Helix 45
45
B
547 556Right-handed alpha
Helix 46
46
C
64 95Right-handed alpha
Helix 47
47
C
100 119Right-handed alpha
Helix 48
48
C
119 130Right-handed alpha
Helix 49
49
C
137 171Right-handed alpha
Helix 50
50
C
180 211Right-handed alpha
Helix 51
51
C
222 226Right-handed 310
Helix 52
52
C
227 239Right-handed alpha
Helix 53
53
C
239 256Right-handed alpha
Helix 54
54
C
257 1012Right-handed alpha
Helix 55
55
C
1038 1051Right-handed alpha
Helix 56
56
C
1059 1080Right-handed alpha
Helix 57
57
C
1084 1090Right-handed alpha
Helix 58
58
C
1092 1106Right-handed alpha
Helix 59
59
C
1107 1113Right-handed alpha
Helix 60
60
C
1114 1123Right-handed alpha
Helix 61
61
C
1125 1135Right-handed alpha
Helix 62
62
C
1136 1142Right-handed alpha
Helix 63
63
C
1142 1155Right-handed alpha
Helix 64
64
C
491 514Right-handed alpha
Helix 65
65
C
521 547Right-handed alpha
Helix 66
66
C
547 556Right-handed alpha
Helix 67
67
D
66 95Right-handed alpha
Helix 68
68
D
96 99Right-handed 310
Helix 69
69
D
100 119Right-handed alpha
Helix 70
70
D
119 131Right-handed alpha
Helix 71
71
D
137 171Right-handed alpha
Helix 72
72
D
180 211Right-handed alpha
Helix 73
73
D
222 226Right-handed 310
Helix 74
74
D
227 239Right-handed alpha
Helix 75
75
D
239 256Right-handed alpha
Helix 76
76
D
257 1012Right-handed alpha
Helix 77
77
D
1038 1051Right-handed alpha
Helix 78
78
D
1059 1081Right-handed alpha
Helix 79
79
D
1083 1090Right-handed alpha
Helix 80
80
D
1092 1107Right-handed alpha
Helix 81
81
D
1107 1112Right-handed alpha
Helix 82
82
D
1114 1123Right-handed alpha
Helix 83
83
D
1125 1135Right-handed alpha
Helix 84
84
D
1136 1142Right-handed alpha
Helix 85
85
D
1142 1156Right-handed alpha
Helix 86
86
D
491 515Right-handed alpha
Helix 87
87
D
521 547Right-handed alpha
Helix 88
88
D
547 559Right-handed alpha
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There are 4 sheets in PDB entry 4DAJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1014 1019first strand
Strand 2
A
1025 1028anti-parallel
Strand 3
A
1031 1034anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1014 1019first strand
Strand 2
B
1025 1028anti-parallel
Strand 3
B
1031 1034anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1014 1019first strand
Strand 2
C
1025 1028anti-parallel
Strand 3
C
1031 1034anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1014 1019first strand
Strand 2
D
1025 1028anti-parallel
Strand 3
D
1032 1034anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il