Analysis of interatomic Contacts of Structural Units in PDB entry:
4DB1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DB1 entry

There are 2 chains in PDB entry 4DB1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ARG 777
B
 GLY 1ALA 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 66 helices in PDB entry 4DB1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 16Right-handed 310
Helix 2
2
A
19 29Right-handed alpha
Helix 3
3
A
74 76Right-handed 310
Helix 4
4
A
81 85Right-handed 310
Helix 5
5
A
89 93Right-handed 310
Helix 6
6
A
97 111Right-handed alpha
Helix 7
7
A
135 143Right-handed alpha
Helix 8
8
A
146 150Right-handed 310
Helix 9
9
A
153 169Right-handed alpha
Helix 10
10
A
183 199Right-handed alpha
Helix 11
11
A
215 231Right-handed alpha
Helix 12
12
A
269 274Right-handed 310
Helix 13
13
A
283 291Right-handed alpha
Helix 14
14
A
294 301Right-handed alpha
Helix 15
15
A
306 314Right-handed 310
Helix 16
16
A
324 339Right-handed alpha
Helix 17
17
A
342 360Right-handed alpha
Helix 18
18
A
378 388Right-handed alpha
Helix 19
19
A
391 401Right-handed alpha
Helix 20
20
A
416 448Right-handed alpha
Helix 21
21
A
472 505Right-handed alpha
Helix 22
22
A
512 516Right-handed 310
Helix 23
23
A
517 526Right-handed alpha
Helix 24
24
A
529 536Right-handed alpha
Helix 25
25
A
544 557Right-handed alpha
Helix 26
26
A
592 599Right-handed alpha
Helix 27
27
A
602 611Right-handed alpha
Helix 28
28
A
614 623Right-handed alpha
Helix 29
29
A
646 664Right-handed alpha
Helix 30
30
A
685 696Right-handed alpha
Helix 31
31
A
697 707Right-handed alpha
Helix 32
32
A
743 748Right-handed alpha
Helix 33
33
A
752 754Right-handed 310
Helix 34
34
A
768 777Right-handed alpha
Helix 35
35
B
3 16Right-handed 310
Helix 36
36
B
19 29Right-handed alpha
Helix 37
37
B
74 76Right-handed 310
Helix 38
38
B
81 85Right-handed 310
Helix 39
39
B
89 93Right-handed 310
Helix 40
40
B
97 110Right-handed alpha
Helix 41
41
B
135 143Right-handed alpha
Helix 42
42
B
146 150Right-handed 310
Helix 43
43
B
153 169Right-handed alpha
Helix 44
44
B
183 199Right-handed alpha
Helix 45
45
B
215 231Right-handed alpha
Helix 46
46
B
269 274Right-handed 310
Helix 47
47
B
283 291Right-handed alpha
Helix 48
48
B
294 302Right-handed alpha
Helix 49
49
B
306 314Right-handed 310
Helix 50
50
B
324 339Right-handed alpha
Helix 51
51
B
342 360Right-handed alpha
Helix 52
52
B
378 388Right-handed alpha
Helix 53
53
B
391 401Right-handed alpha
Helix 54
54
B
416 448Right-handed alpha
Helix 55
55
B
472 503Right-handed alpha
Helix 56
56
B
512 516Right-handed 310
Helix 57
57
B
517 526Right-handed alpha
Helix 58
58
B
529 539Right-handed alpha
Helix 59
59
B
544 557Right-handed alpha
Helix 60
60
B
592 599Right-handed alpha
Helix 61
61
B
602 611Right-handed alpha
Helix 62
62
B
614 623Right-handed alpha
Helix 63
63
B
646 663Right-handed alpha
Helix 64
64
B
685 697Right-handed alpha
Helix 65
65
B
701 708Right-handed alpha
Helix 66
66
B
768 774Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 4DB1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
58 63anti-parallel
Strand 3
A
46 54anti-parallel
Strand 4
A
36 40anti-parallel
Strand 5
A
77 78anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
121 125anti-parallel
Strand 3
A
666 673parallel
Strand 4
A
172 177parallel
Strand 5
A
455 461parallel
Strand 6
A
245 252anti-parallel
Strand 7
A
258 266anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
241 242anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
373 375anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 564first strand
Strand 2
A
577 581anti-parallel
Strand 3
A
584 588anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 714first strand
Strand 2
A
762 765anti-parallel
Strand 3
A
756 758anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 72first strand
Strand 2
B
58 63anti-parallel
Strand 3
B
46 54anti-parallel
Strand 4
B
36 40anti-parallel
Strand 5
B
77 78anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
121 125anti-parallel
Strand 3
B
666 673parallel
Strand 4
B
172 178parallel
Strand 5
B
455 461parallel
Strand 6
B
245 252anti-parallel
Strand 7
B
258 266anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
241 242anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 366first strand
Strand 2
B
373 375anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
563 564first strand
Strand 2
B
577 581anti-parallel
Strand 3
B
584 588anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
711 713first strand
Strand 2
B
763 765anti-parallel
Strand 3
B
756 758anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il