Analysis of interatomic Contacts of Structural Units in PDB entry:
4DJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DJE entry

There are 6 chains in PDB entry 4DJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 262
B
 MET 1ARG 262
C
 PRO 2ALA 442
D
 MET 1TYR 323
E
 PRO 2ALA 442
F
 MET 1TYR 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 97 helices in PDB entry 4DJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 22Right-handed alpha
Helix 2
2
A
23 38Right-handed alpha
Helix 3
3
A
52 65Right-handed alpha
Helix 4
4
A
78 87Right-handed alpha
Helix 5
5
A
101 106Right-handed alpha
Helix 6
6
A
108 116Right-handed alpha
Helix 7
7
A
132 150Right-handed alpha
Helix 8
8
A
153 155Right-handed 310
Helix 9
9
A
171 183Right-handed alpha
Helix 10
10
A
184 186Right-handed 310
Helix 11
11
A
196 202Right-handed 310
Helix 12
12
A
206 220Right-handed alpha
Helix 13
13
A
232 246Right-handed alpha
Helix 14
14
A
254 261Right-handed alpha
Helix 15
15
B
12 21Right-handed alpha
Helix 16
16
B
23 38Right-handed alpha
Helix 17
17
B
53 65Right-handed alpha
Helix 18
18
B
78 88Right-handed alpha
Helix 19
19
B
101 106Right-handed alpha
Helix 20
20
B
108 116Right-handed alpha
Helix 21
21
B
132 148Right-handed alpha
Helix 22
22
B
153 155Right-handed 310
Helix 23
23
B
172 182Right-handed alpha
Helix 24
24
B
196 202Right-handed 310
Helix 25
25
B
206 221Right-handed alpha
Helix 26
26
B
232 246Right-handed alpha
Helix 27
27
B
254 261Right-handed alpha
Helix 28
28
C
4 10Right-handed alpha
Helix 29
29
C
24 34Right-handed alpha
Helix 30
30
C
46 57Right-handed alpha
Helix 31
31
C
103 115Right-handed alpha
Helix 32
32
C
140 154Right-handed alpha
Helix 33
33
C
164 173Right-handed alpha
Helix 34
34
C
174 176Right-handed 310
Helix 35
35
C
189 200Right-handed alpha
Helix 36
36
C
211 223Right-handed alpha
Helix 37
37
C
237 254Right-handed alpha
Helix 38
38
C
272 286Right-handed alpha
Helix 39
39
C
297 312Right-handed alpha
Helix 40
40
C
343 358Right-handed alpha
Helix 41
41
C
372 379Right-handed alpha
Helix 42
42
C
383 392Right-handed alpha
Helix 43
43
C
395 400Right-handed alpha
Helix 44
44
C
411 413Right-handed 310
Helix 45
45
C
414 422Right-handed alpha
Helix 46
46
C
432 434Right-handed 310
Helix 47
47
C
435 441Right-handed alpha
Helix 48
48
D
44 48Right-handed 310
Helix 49
49
D
68 73Right-handed alpha
Helix 50
50
D
74 76Right-handed 310
Helix 51
51
D
81 92Right-handed alpha
Helix 52
52
D
103 106Right-handed 310
Helix 53
53
D
113 128Right-handed alpha
Helix 54
54
D
139 154Right-handed alpha
Helix 55
55
D
169 179Right-handed alpha
Helix 56
56
D
190 203Right-handed alpha
Helix 57
57
D
207 209Right-handed 310
Helix 58
58
D
223 241Right-handed alpha
Helix 59
59
D
242 246Right-handed 310
Helix 60
60
D
252 258Right-handed alpha
Helix 61
61
D
260 265Right-handed alpha
Helix 62
62
D
275 293Right-handed alpha
Helix 63
63
D
303 318Right-handed alpha
Helix 64
64
E
4 12Right-handed alpha
Helix 65
65
E
24 35Right-handed alpha
Helix 66
66
E
47 58Right-handed alpha
Helix 67
67
E
68 72Right-handed 310
Helix 68
68
E
103 115Right-handed alpha
Helix 69
69
E
140 152Right-handed alpha
Helix 70
70
E
164 173Right-handed alpha
Helix 71
71
E
175 179Right-handed 310
Helix 72
72
E
189 200Right-handed alpha
Helix 73
73
E
209 223Right-handed alpha
Helix 74
74
E
237 255Right-handed alpha
Helix 75
75
E
272 286Right-handed alpha
Helix 76
76
E
301 312Right-handed alpha
Helix 77
77
E
343 357Right-handed alpha
Helix 78
78
E
372 379Right-handed alpha
Helix 79
79
E
383 394Right-handed alpha
Helix 80
80
E
396 400Right-handed 310
Helix 81
81
E
411 413Right-handed 310
Helix 82
82
E
414 423Right-handed alpha
Helix 83
83
E
432 435Right-handed 310
Helix 84
84
E
436 441Right-handed alpha
Helix 85
85
F
68 73Right-handed alpha
Helix 86
86
F
81 92Right-handed alpha
Helix 87
87
F
103 106Right-handed 310
Helix 88
88
F
113 128Right-handed alpha
Helix 89
89
F
139 154Right-handed alpha
Helix 90
90
F
169 179Right-handed alpha
Helix 91
91
F
190 203Right-handed alpha
Helix 92
92
F
207 209Right-handed 310
Helix 93
93
F
223 239Right-handed alpha
Helix 94
94
F
252 258Right-handed alpha
Helix 95
95
F
270 274Right-handed 310
Helix 96
96
F
275 293Right-handed alpha
Helix 97
97
F
303 318Right-handed alpha
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There are 17 sheets in PDB entry 4DJE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
41 44parallel
Strand 3
A
71 75parallel
Strand 4
A
93 98parallel
Strand 5
A
118 122parallel
Strand 6
A
157 160parallel
Strand 7
A
192 195parallel
Strand 8
A
225 226parallel
Strand 9
A
2 5parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
41 44parallel
Strand 3
B
71 75parallel
Strand 4
B
93 98parallel
Strand 5
B
118 122parallel
Strand 6
B
157 160parallel
Strand 7
B
192 195parallel
Strand 8
B
225 228parallel
Strand 9
B
2 5parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 66first strand
Strand 2
C
73 76anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 232first strand
Strand 2
C
204 207parallel
Strand 3
C
181 185parallel
Strand 4
C
157 161parallel
Strand 5
C
130 134parallel
Strand 6
C
93 99parallel
Strand 7
C
290 293parallel
Strand 8
C
265 267parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 121first strand
Strand 2
C
124 126anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
325 328first strand
Strand 2
C
361 366anti-parallel
Strand 3
C
337 341parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
405 407first strand
Strand 2
C
426 428parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 19first strand
Strand 2
D
33 36anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 135first strand
Strand 2
D
97 101parallel
Strand 3
D
55 61parallel
Strand 4
D
296 301parallel
Strand 5
D
249 251parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
160 164first strand
Strand 2
D
182 186parallel
Strand 3
D
211 214parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
63 66first strand
Strand 2
E
73 76anti-parallel
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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
229 232first strand
Strand 2
E
204 207parallel
Strand 3
E
181 185parallel
Strand 4
E
157 161parallel
Strand 5
E
130 134parallel
Strand 6
E
93 98parallel
Strand 7
E
290 293parallel
Strand 8
E
265 267parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
119 121first strand
Strand 2
E
124 126anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
324 328first strand
Strand 2
E
361 366anti-parallel
Strand 3
E
337 341parallel
Strand 4
E
404 407parallel
Strand 5
E
425 428parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
16 19first strand
Strand 2
F
33 36anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
132 135first strand
Strand 2
F
97 101parallel
Strand 3
F
55 59parallel
Strand 4
F
296 301parallel
Strand 5
F
249 251parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
160 164first strand
Strand 2
F
182 186parallel
Strand 3
F
211 214parallel
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