Analysis of interatomic Contacts of Structural Units in PDB entry:
4DJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DJI entry

There are 2 chains in PDB entry 4DJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10LYS 509
B
 GLN 12ILE 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 4DJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 23Right-handed alpha
Helix 2
2
A
24 26Right-handed 310
Helix 3
3
A
32 36Right-handed 310
Helix 4
4
A
38 40Right-handed 310
Helix 5
5
A
41 53Right-handed alpha
Helix 6
6
A
53 66Right-handed alpha
Helix 7
7
A
76 83Right-handed alpha
Helix 8
8
A
84 93Right-handed alpha
Helix 9
9
A
96 118Right-handed alpha
Helix 10
10
A
126 147Right-handed alpha
Helix 11
11
A
151 163Right-handed alpha
Helix 12
12
A
164 181Right-handed alpha
Helix 13
13
A
203 205Right-handed 310
Helix 14
14
A
206 215Right-handed alpha
Helix 15
15
A
221 225Right-handed 310
Helix 16
16
A
229 260Right-handed alpha
Helix 17
17
A
261 265Right-handed 310
Helix 18
18
A
269 283Right-handed alpha
Helix 19
19
A
284 287Right-handed 310
Helix 20
20
A
288 309Right-handed alpha
Helix 21
21
A
310 316Right-handed alpha
Helix 22
22
A
317 322Right-handed alpha
Helix 23
23
A
338 354Right-handed alpha
Helix 24
24
A
363 396Right-handed alpha
Helix 25
25
A
408 430Right-handed alpha
Helix 26
26
A
444 455Right-handed alpha
Helix 27
27
A
458 467Right-handed alpha
Helix 28
28
B
14 22Right-handed alpha
Helix 29
29
B
28 30Right-handed 310
Helix 30
30
B
31 37Right-handed alpha
Helix 31
31
B
40 52Right-handed alpha
Helix 32
32
B
53 66Right-handed alpha
Helix 33
33
B
74 83Right-handed alpha
Helix 34
34
B
84 103Right-handed alpha
Helix 35
35
B
103 118Right-handed alpha
Helix 36
36
B
121 126Right-handed alpha
Helix 37
37
B
126 147Right-handed alpha
Helix 38
38
B
152 164Right-handed alpha
Helix 39
39
B
165 178Right-handed alpha
Helix 40
40
B
206 215Right-handed alpha
Helix 41
41
B
218 227Right-handed 310
Helix 42
42
B
233 258Right-handed alpha
Helix 43
43
B
269 283Right-handed alpha
Helix 44
44
B
284 287Right-handed 310
Helix 45
45
B
288 309Right-handed alpha
Helix 46
46
B
311 316Right-handed alpha
Helix 47
47
B
317 322Right-handed alpha
Helix 48
48
B
338 359Right-handed alpha
Helix 49
49
B
364 396Right-handed alpha
Helix 50
50
B
408 430Right-handed alpha
Helix 51
51
B
444 467Right-handed alpha
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There are 2 sheets in PDB entry 4DJI. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 480first strand
Strand 2
A
503 505anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
480 481first strand
Strand 2
B
502 503anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il