Analysis of interatomic Contacts of Structural Units in PDB entry:
4DK9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DK9 entry

There are 4 chains in PDB entry 4DK9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
A 1 C 11
C
T 12 A 17
C
G 19 T 22
A
TRP 438LEU 577
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4DK9. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
448 453Right-handed alpha
Helix 2
2
A
455 466Right-handed alpha
Helix 3
3
A
470 485Right-handed alpha
Helix 4
4
A
487 492Right-handed alpha
Helix 5
5
A
495 504Right-handed alpha
Helix 6
6
A
508 526Right-handed alpha
Helix 7
7
A
530 534Right-handed 310
Helix 8
8
A
538 549Right-handed alpha
Helix 9
9
A
552 556Right-handed 310
Helix 10
10
A
560 574Right-handed alpha
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There are no sheets in PDB entry 4DK9

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il