Analysis of interatomic Contacts of Structural Units in PDB entry:
4DKB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DKB entry

There is 1 chain in PDB entry 4DKB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7LEU 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4DKB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 29Right-handed alpha
Helix 2
2
A
31 36Right-handed alpha
Helix 3
3
A
37 54Right-handed alpha
Helix 4
4
A
69 91Right-handed alpha
Helix 5
5
A
152 156Right-handed 310
Helix 6
6
A
163 180Right-handed alpha
Helix 7
7
A
182 198Right-handed alpha
Helix 8
8
A
200 218Right-handed alpha
Helix 9
9
A
237 243Right-handed alpha
Helix 10
10
A
246 252Right-handed alpha
Helix 11
11
A
255 271Right-handed alpha
Helix 12
12
A
274 278Right-handed 310
Helix 13
13
A
280 285Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4DKB.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
232 233anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il