Analysis of interatomic Contacts of Structural Units in PDB entry:
4DM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DM0 entry

There are 3 chains in PDB entry 4DM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3GLY 477
B
 G 101 A 121
C
 C 201 C 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4DM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 18Right-handed alpha
Helix 2
2
A
24 41Right-handed alpha
Helix 3
3
A
45 50Right-handed alpha
Helix 4
4
A
53 65Right-handed alpha
Helix 5
5
A
70 87Right-handed alpha
Helix 6
6
A
105 111Right-handed 310
Helix 7
7
A
153 157Right-handed 310
Helix 8
8
A
160 162Right-handed 310
Helix 9
9
A
163 177Right-handed alpha
Helix 10
10
A
178 181Right-handed 310
Helix 11
11
A
188 192Right-handed 310
Helix 12
12
A
193 203Right-handed alpha
Helix 13
13
A
223 231Right-handed alpha
Helix 14
14
A
273 276Right-handed 310
Helix 15
15
A
308 321Right-handed alpha
Helix 16
16
A
323 333Right-handed alpha
Helix 17
17
A
345 369Right-handed alpha
Helix 18
18
A
392 396Right-handed 310
Helix 19
19
A
398 410Right-handed alpha
Helix 20
20
A
421 433Right-handed alpha
Helix 21
21
A
445 472Right-handed alpha
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There are 3 sheets in PDB entry 4DM0. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
122 133anti-parallel
Strand 3
A
139 148anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
122 133anti-parallel
Strand 3
A
92 103anti-parallel
Strand 4
A
183 187parallel
Strand 5
A
206 210parallel
Strand 6
A
297 302anti-parallel
Strand 7
A
277 287anti-parallel
Strand 8
A
259 272anti-parallel
Strand 9
A
235 241anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
253 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il