Analysis of interatomic Contacts of Structural Units in PDB entry:
4DSI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DSI entry

There are 3 chains in PDB entry 4DSI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 296LYS 876
B
C 4 G 12
C
C 1 G 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4DSI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
308 313Right-handed 310
Helix 2
2
A
347 352Right-handed alpha
Helix 3
3
A
354 363Right-handed alpha
Helix 4
4
A
372 382Right-handed alpha
Helix 5
5
A
394 402Right-handed alpha
Helix 6
6
A
403 406Right-handed 310
Helix 7
7
A
409 416Right-handed alpha
Helix 8
8
A
424 430Right-handed alpha
Helix 9
9
A
439 468Right-handed alpha
Helix 10
10
A
470 477Right-handed alpha
Helix 11
11
A
477 492Right-handed alpha
Helix 12
12
A
496 522Right-handed alpha
Helix 13
13
A
530 540Right-handed alpha
Helix 14
14
A
557 565Right-handed alpha
Helix 15
15
A
566 568Right-handed 310
Helix 16
16
A
569 588Right-handed alpha
Helix 17
17
A
588 595Right-handed alpha
Helix 18
18
A
630 635Right-handed alpha
Helix 19
19
A
636 638Right-handed 310
Helix 20
20
A
656 667Right-handed alpha
Helix 21
21
A
668 677Right-handed alpha
Helix 22
22
A
680 691Right-handed alpha
Helix 23
23
A
693 697Right-handed 310
Helix 24
24
A
698 712Right-handed alpha
Helix 25
25
A
713 715Right-handed 310
Helix 26
26
A
717 726Right-handed alpha
Helix 27
27
A
728 743Right-handed alpha
Helix 28
28
A
743 761Right-handed alpha
Helix 29
29
A
774 778Right-handed 310
Helix 30
30
A
780 819Right-handed alpha
Helix 31
31
A
840 855Right-handed alpha
Helix 32
32
A
871 875Right-handed 310
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There are 5 sheets in PDB entry 4DSI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
302 303first strand
Strand 2
A
342 346parallel
Strand 3
A
334 339anti-parallel
Strand 4
A
315 321anti-parallel
Strand 5
A
367 370parallel
Strand 6
A
390 393parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
601 602first strand
Strand 2
A
493 495anti-parallel
Strand 3
A
640 641anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
605 607first strand
Strand 2
A
617 619anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
823 827first strand
Strand 2
A
831 837anti-parallel
Strand 3
A
647 654anti-parallel
Strand 4
A
864 869anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
762 764first strand
Strand 2
A
770 772anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il