Analysis of interatomic Contacts of Structural Units in PDB entry:
4DVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DVH entry

There are 2 chains in PDB entry 4DVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LYS 202
B
 HIS -1ILE 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4DVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
21 31Right-handed alpha
Helix 3
3
A
31 45Right-handed alpha
Helix 4
4
A
52 61Right-handed alpha
Helix 5
5
A
63 65Right-handed 310
Helix 6
6
A
66 85Right-handed alpha
Helix 7
7
A
94 106Right-handed alpha
Helix 8
8
A
107 121Right-handed alpha
Helix 9
9
A
150 155Right-handed 310
Helix 10
10
A
165 168Right-handed 310
Helix 11
11
A
169 174Right-handed alpha
Helix 12
12
A
176 184Right-handed alpha
Helix 13
13
A
185 187Right-handed 310
Helix 14
14
A
189 201Right-handed alpha
Helix 15
15
B
11 15Right-handed 310
Helix 16
16
B
21 31Right-handed alpha
Helix 17
17
B
31 45Right-handed alpha
Helix 18
18
B
52 61Right-handed alpha
Helix 19
19
B
63 65Right-handed 310
Helix 20
20
B
66 86Right-handed alpha
Helix 21
21
B
94 106Right-handed alpha
Helix 22
22
B
107 121Right-handed alpha
Helix 23
23
B
150 155Right-handed 310
Helix 24
24
B
165 168Right-handed 310
Helix 25
25
B
169 174Right-handed alpha
Helix 26
26
B
176 184Right-handed alpha
Helix 27
27
B
185 187Right-handed 310
Helix 28
28
B
189 201Right-handed alpha
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There are 2 sheets in PDB entry 4DVH. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 146first strand
Strand 2
A
126 132anti-parallel
Strand 3
A
157 163anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 146first strand
Strand 2
B
126 132anti-parallel
Strand 3
B
157 163anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il