Analysis of interatomic Contacts of Structural Units in PDB entry:
4DVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DVI entry

There are 2 chains in PDB entry 4DVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1104GLU 1314
B
 GLN 1104GLU 1314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4DVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1115 1128Right-handed alpha
Helix 2
2
A
1155 1156Right-handed 310
Helix 3
3
A
1158 1158Right-handed 310
Helix 4
4
A
1159 1172Right-handed alpha
Helix 5
5
A
1188 1196Right-handed alpha
Helix 6
6
A
1198 1202Right-handed 310
Helix 7
7
A
1217 1223Right-handed alpha
Helix 8
8
A
1227 1231Right-handed 310
Helix 9
9
A
1296 1298Right-handed 310
Helix 10
10
B
1115 1128Right-handed alpha
Helix 11
11
B
1155 1173Right-handed alpha
Helix 12
12
B
1188 1196Right-handed alpha
Helix 13
13
B
1198 1202Right-handed 310
Helix 14
14
B
1217 1222Right-handed alpha
Helix 15
15
B
1223 1225Right-handed 310
Helix 16
16
B
1227 1231Right-handed 310
Helix 17
17
B
1296 1298Right-handed 310
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There are 4 sheets in PDB entry 4DVI. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1107 1110first strand
Strand 2
A
1144 1154anti-parallel
Strand 3
A
1300 1311anti-parallel
Strand 4
A
1247 1255anti-parallel
Strand 5
A
1179 1184anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1212 1214first strand
Strand 2
A
1291 1294anti-parallel
Strand 3
A
1277 1280anti-parallel
Strand 4
A
1259 1262parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1107 1110first strand
Strand 2
B
1145 1154anti-parallel
Strand 3
B
1300 1310anti-parallel
Strand 4
B
1247 1255anti-parallel
Strand 5
B
1179 1184anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1212 1215first strand
Strand 2
B
1291 1294anti-parallel
Strand 3
B
1277 1280anti-parallel
Strand 4
B
1259 1261parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il