Analysis of interatomic Contacts of Structural Units in PDB entry:
4DY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DY0 entry

There are 2 chains in PDB entry 4DY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3PRO 379
B
 ASN 4PRO 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 4DY0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 27Right-handed alpha
Helix 2
2
A
35 48Right-handed alpha
Helix 3
3
A
51 63Right-handed alpha
Helix 4
4
A
69 82Right-handed alpha
Helix 5
5
A
83 86Right-handed 310
Helix 6
6
A
104 116Right-handed alpha
Helix 7
7
A
126 142Right-handed alpha
Helix 8
8
A
151 155Right-handed 310
Helix 9
9
A
179 183Right-handed 310
Helix 10
10
A
245 249Right-handed 310
Helix 11
11
A
254 263Right-handed alpha
Helix 12
12
A
285 292Right-handed alpha
Helix 13
13
A
295 299Right-handed 310
Helix 14
14
B
5 27Right-handed alpha
Helix 15
15
B
35 48Right-handed alpha
Helix 16
16
B
51 63Right-handed alpha
Helix 17
17
B
66 68Right-handed 310
Helix 18
18
B
69 82Right-handed alpha
Helix 19
19
B
83 86Right-handed 310
Helix 20
20
B
104 116Right-handed alpha
Helix 21
21
B
126 142Right-handed alpha
Helix 22
22
B
151 155Right-handed 310
Helix 23
23
B
179 183Right-handed 310
Helix 24
24
B
245 249Right-handed 310
Helix 25
25
B
254 263Right-handed alpha
Helix 26
26
B
285 292Right-handed alpha
Helix 27
27
B
295 299Right-handed 310
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There are 6 sheets in PDB entry 4DY0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
369 376anti-parallel
Strand 3
A
358 364anti-parallel
Strand 4
A
232 239anti-parallel
Strand 5
A
219 226anti-parallel
Strand 6
A
195 213anti-parallel
Strand 7
A
184 189anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
369 376anti-parallel
Strand 3
A
358 364anti-parallel
Strand 4
A
232 239anti-parallel
Strand 5
A
219 226anti-parallel
Strand 6
A
195 213anti-parallel
Strand 7
A
266 275anti-parallel
Strand 8
A
351 353parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
90 97parallel
Strand 3
A
162 170anti-parallel
Strand 4
A
319 328parallel
Strand 5
A
277 284anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
369 376anti-parallel
Strand 3
B
358 364anti-parallel
Strand 4
B
232 239anti-parallel
Strand 5
B
219 226anti-parallel
Strand 6
B
195 213anti-parallel
Strand 7
B
184 189anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
369 376anti-parallel
Strand 3
B
358 364anti-parallel
Strand 4
B
232 239anti-parallel
Strand 5
B
219 226anti-parallel
Strand 6
B
195 213anti-parallel
Strand 7
B
266 275anti-parallel
Strand 8
B
351 353parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 122first strand
Strand 2
B
90 98parallel
Strand 3
B
162 170anti-parallel
Strand 4
B
317 328parallel
Strand 5
B
277 284anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il