Analysis of interatomic Contacts of Structural Units in PDB entry:
4DY7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DY7 entry

There are 6 chains in PDB entry 4DY7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1ARG 15
B
 ILE 16GLY 246
C
 PHE 3PRO 379
D
 GLN 1ASP 41
E
 ILE 16ILE 242
F
 HIS 2PRO 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 4DY7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 1Right-handed alpha
Helix 2
2
A
1 1Right-handed 310
Helix 3
3
A
7 11Right-handed 310
Helix 4
4
A
14 14Right-handed alpha
Helix 5
5
B
55 58Right-handed 310
Helix 6
6
B
60 60Right-handed 310
Helix 7
7
B
125 130Right-handed alpha
Helix 8
8
B
164 170Right-handed alpha
Helix 9
9
B
185 186Right-handed 310
Helix 10
10
B
234 245Right-handed alpha
Helix 11
11
C
4 27Right-handed alpha
Helix 12
12
C
35 49Right-handed alpha
Helix 13
13
C
52 63Right-handed alpha
Helix 14
14
C
69 82Right-handed alpha
Helix 15
15
C
83 86Right-handed 310
Helix 16
16
C
104 115Right-handed alpha
Helix 17
17
C
126 142Right-handed alpha
Helix 18
18
C
179 183Right-handed 310
Helix 19
19
C
245 253Right-handed 310
Helix 20
20
C
254 265Right-handed alpha
Helix 21
21
C
285 293Right-handed alpha
Helix 22
22
C
295 299Right-handed 310
Helix 23
23
C
337 342Right-handed alpha
Helix 24
24
D
32 38Right-handed alpha
Helix 25
25
E
60 60Right-handed 310
Helix 26
26
E
127 129Right-handed 310
Helix 27
27
E
164 170Right-handed alpha
Helix 28
28
E
185 186Right-handed 310
Helix 29
29
E
231 242Right-handed alpha
Helix 30
30
F
4 27Right-handed alpha
Helix 31
31
F
35 48Right-handed alpha
Helix 32
32
F
51 63Right-handed alpha
Helix 33
33
F
65 82Right-handed alpha
Helix 34
34
F
83 86Right-handed 310
Helix 35
35
F
104 116Right-handed alpha
Helix 36
36
F
126 142Right-handed alpha
Helix 37
37
F
151 155Right-handed 310
Helix 38
38
F
156 160Right-handed 310
Helix 39
39
F
179 183Right-handed 310
Helix 40
40
F
245 253Right-handed 310
Helix 41
41
F
254 265Right-handed alpha
Helix 42
42
F
285 293Right-handed alpha
Helix 43
43
F
295 299Right-handed 310
Helix 44
44
F
305 309Right-handed 310
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There are 12 sheets in PDB entry 4DY7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
135 140anti-parallel
Strand 4
B
198 202anti-parallel
Strand 5
B
207 215anti-parallel
Strand 6
B
226 230anti-parallel
Strand 7
B
180 183anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
64 68anti-parallel
Strand 3
B
30 35anti-parallel
Strand 4
B
39 46anti-parallel
Strand 5
B
51 54anti-parallel
Strand 6
B
104 108anti-parallel
Strand 7
B
85 90anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 60first strand
Strand 2
B
60 60anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 34first strand
Strand 2
C
369 376anti-parallel
Strand 3
C
358 364anti-parallel
Strand 4
C
232 239anti-parallel
Strand 5
C
219 226anti-parallel
Strand 6
C
211 213anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 122first strand
Strand 2
C
89 98parallel
Strand 3
C
162 170anti-parallel
Strand 4
C
317 328parallel
Strand 5
C
277 284anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
184 189first strand
Strand 2
C
195 209anti-parallel
Strand 3
C
266 275anti-parallel
Strand 4
C
351 353parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 21first strand
Strand 2
E
156 161anti-parallel
Strand 3
E
135 140anti-parallel
Strand 4
E
198 202anti-parallel
Strand 5
E
207 213anti-parallel
Strand 6
E
226 230anti-parallel
Strand 7
E
180 183anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
81 82first strand
Strand 2
E
67 68anti-parallel
Strand 3
E
30 35anti-parallel
Strand 4
E
39 46anti-parallel
Strand 5
E
51 55anti-parallel
Strand 6
E
103 108anti-parallel
Strand 7
E
85 89anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
60 60first strand
Strand 2
E
60 60anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
32 34first strand
Strand 2
F
370 376anti-parallel
Strand 3
F
358 364anti-parallel
Strand 4
F
232 239anti-parallel
Strand 5
F
219 226anti-parallel
Strand 6
F
195 213anti-parallel
Strand 7
F
185 189anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
32 34first strand
Strand 2
F
370 376anti-parallel
Strand 3
F
358 364anti-parallel
Strand 4
F
232 239anti-parallel
Strand 5
F
219 226anti-parallel
Strand 6
F
195 213anti-parallel
Strand 7
F
266 275anti-parallel
Strand 8
F
351 353parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
117 122first strand
Strand 2
F
90 98parallel
Strand 3
F
162 170anti-parallel
Strand 4
F
317 328parallel
Strand 5
F
277 284anti-parallel
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