Analysis of interatomic Contacts of Structural Units in PDB entry:
4EBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EBB entry

There are 2 chains in PDB entry 4EBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 28ARG 477
B
 PRO 27ARG 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 4EBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 88Right-handed alpha
Helix 2
2
A
88 99Right-handed alpha
Helix 3
3
A
116 122Right-handed 310
Helix 4
4
A
130 149Right-handed alpha
Helix 5
5
A
162 175Right-handed alpha
Helix 6
6
A
190 194Right-handed 310
Helix 7
7
A
199 211Right-handed alpha
Helix 8
8
A
213 234Right-handed alpha
Helix 9
9
A
235 244Right-handed alpha
Helix 10
10
A
251 272Right-handed alpha
Helix 11
11
A
287 298Right-handed alpha
Helix 12
12
A
301 315Right-handed alpha
Helix 13
13
A
324 329Right-handed alpha
Helix 14
14
A
341 352Right-handed alpha
Helix 15
15
A
374 387Right-handed alpha
Helix 16
16
A
393 400Right-handed alpha
Helix 17
17
A
420 424Right-handed 310
Helix 18
18
A
444 448Right-handed 310
Helix 19
19
A
455 477Right-handed alpha
Helix 20
20
B
80 88Right-handed alpha
Helix 21
21
B
88 99Right-handed alpha
Helix 22
22
B
116 122Right-handed 310
Helix 23
23
B
130 149Right-handed alpha
Helix 24
24
B
162 175Right-handed alpha
Helix 25
25
B
190 194Right-handed 310
Helix 26
26
B
199 213Right-handed alpha
Helix 27
27
B
213 234Right-handed alpha
Helix 28
28
B
235 244Right-handed alpha
Helix 29
29
B
251 272Right-handed alpha
Helix 30
30
B
287 298Right-handed alpha
Helix 31
31
B
301 315Right-handed alpha
Helix 32
32
B
324 329Right-handed alpha
Helix 33
33
B
341 352Right-handed alpha
Helix 34
34
B
374 387Right-handed alpha
Helix 35
35
B
393 400Right-handed alpha
Helix 36
36
B
420 424Right-handed 310
Helix 37
37
B
444 448Right-handed 310
Helix 38
38
B
455 477Right-handed alpha
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There are 4 sheets in PDB entry 4EBB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 39first strand
Strand 2
A
52 60anti-parallel
Strand 3
A
101 105anti-parallel
Strand 4
A
71 75parallel
Strand 5
A
156 161parallel
Strand 6
A
181 185parallel
Strand 7
A
410 415parallel
Strand 8
A
433 438parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
283 284anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 39first strand
Strand 2
B
52 60anti-parallel
Strand 3
B
101 105anti-parallel
Strand 4
B
71 75parallel
Strand 5
B
156 161parallel
Strand 6
B
181 185parallel
Strand 7
B
410 415parallel
Strand 8
B
433 438parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 279first strand
Strand 2
B
283 284anti-parallel
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