Analysis of interatomic Contacts of Structural Units in PDB entry:
4F0Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F0Z entry

There are 3 chains in PDB entry 4F0Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 14ASN 370
B
 TYR 6ASP 160
C
 LYS 205LEU 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4F0Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 35Right-handed alpha
Helix 2
2
A
42 52Right-handed alpha
Helix 3
3
A
57 74Right-handed alpha
Helix 4
4
A
94 106Right-handed alpha
Helix 5
5
A
125 140Right-handed alpha
Helix 6
6
A
153 160Right-handed alpha
Helix 7
7
A
161 170Right-handed alpha
Helix 8
8
A
171 184Right-handed alpha
Helix 9
9
A
209 214Right-handed alpha
Helix 10
10
A
225 233Right-handed alpha
Helix 11
11
A
261 272Right-handed alpha
Helix 12
12
A
310 314Right-handed 310
Helix 13
13
A
343 347Right-handed 310
Helix 14
14
A
348 370Right-handed alpha
Helix 15
15
B
7 11Right-handed 310
Helix 16
16
B
15 30Right-handed alpha
Helix 17
17
B
38 44Right-handed alpha
Helix 18
18
B
45 49Right-handed 310
Helix 19
19
B
53 62Right-handed alpha
Helix 20
20
B
71 80Right-handed alpha
Helix 21
21
B
86 99Right-handed alpha
Helix 22
22
B
107 120Right-handed alpha
Helix 23
23
B
121 123Right-handed 310
Helix 24
24
B
124 140Right-handed alpha
Helix 25
25
B
149 157Right-handed alpha
Helix 26
26
B
158 160Right-handed 310
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There are 5 sheets in PDB entry 4F0Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
188 191parallel
Strand 3
A
195 198anti-parallel
Strand 4
A
276 279parallel
Strand 5
A
302 305parallel
Strand 6
A
288 290anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
113 115parallel
Strand 3
A
85 88parallel
Strand 4
A
319 325anti-parallel
Strand 5
A
328 334anti-parallel
Strand 6
C
207 211parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
258 260parallel
Strand 3
A
248 250anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 37first strand
Strand 2
B
69 70anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
147 148anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il