Analysis of interatomic Contacts of Structural Units in PDB entry:
4F3T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F3T entry

There are 2 chains in PDB entry 4F3T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 23ALA 859
R
 U 1 G 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4F3T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 82Right-handed alpha
Helix 2
2
A
140 149Right-handed alpha
Helix 3
3
A
155 174Right-handed alpha
Helix 4
4
A
230 239Right-handed alpha
Helix 5
5
A
251 263Right-handed alpha
Helix 6
6
A
308 317Right-handed alpha
Helix 7
7
A
357 369Right-handed alpha
Helix 8
8
A
371 387Right-handed alpha
Helix 9
9
A
388 390Right-handed 310
Helix 10
10
A
391 397Right-handed alpha
Helix 11
11
A
463 482Right-handed alpha
Helix 12
12
A
500 512Right-handed alpha
Helix 13
13
A
527 538Right-handed alpha
Helix 14
14
A
549 554Right-handed alpha
Helix 15
15
A
556 571Right-handed alpha
Helix 16
16
A
584 589Right-handed 310
Helix 17
17
A
641 658Right-handed alpha
Helix 18
18
A
672 674Right-handed 310
Helix 19
19
A
675 695Right-handed alpha
Helix 20
20
A
719 723Right-handed 310
Helix 21
21
A
775 787Right-handed alpha
Helix 22
22
A
800 818Right-handed alpha
Helix 23
23
A
841 846Right-handed alpha
Helix 24
24
A
849 854Right-handed alpha
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There are 8 sheets in PDB entry 4F3T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
625 632first strand
Strand 2
A
610 617anti-parallel
Strand 3
A
591 599anti-parallel
Strand 4
A
663 669parallel
Strand 5
A
701 708parallel
Strand 6
A
763 770anti-parallel
Strand 7
A
747 751anti-parallel
Strand 8
A
734 736anti-parallel
Strand 9
A
406 412anti-parallel
Strand 10
A
36 42anti-parallel
Strand 11
A
715 717anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
180 182anti-parallel
Strand 3
A
196 208anti-parallel
Strand 4
A
191 193anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
180 182anti-parallel
Strand 3
A
196 208anti-parallel
Strand 4
A
213 225anti-parallel
Strand 5
A
44 48anti-parallel
Strand 6
A
400 401anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
99 102anti-parallel
Strand 3
A
53 62anti-parallel
Strand 4
A
128 139anti-parallel
Strand 5
A
112 116anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
344 346anti-parallel
Strand 3
A
266 269anti-parallel
Strand 4
A
278 288anti-parallel
Strand 5
A
326 330anti-parallel
Strand 6
A
337 340anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 297first strand
Strand 2
A
303 307anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
418 419anti-parallel
Strand 3
A
577 578anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 494first strand
Strand 2
A
451 455parallel
Strand 3
A
517 522parallel
Strand 4
A
543 548parallel
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