Analysis of interatomic Contacts of Structural Units in PDB entry:
4F9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F9P entry

There are 4 chains in PDB entry 4F9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 1PHE 213
B
GLN 1PHE 213
D
GLN 1LYS 243
C
GLN 1LYS 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 4F9P. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
72 76Right-handed 310
Helix 2
2
A
88 92Right-handed 310
Helix 3
3
B
57 60Right-handed 310
Helix 4
4
B
88 92Right-handed 310
Helix 5
5
D
28 32Right-handed 310
Helix 6
6
D
87 91Right-handed 310
Helix 7
7
C
28 32Right-handed 310
Helix 8
8
C
87 91Right-handed 310
Helix 9
9
C
215 219Right-handed 310
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There are 20 sheets in PDB entry 4F9P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 14first strand
Strand 2
A
104 115parallel
Strand 3
A
93 101anti-parallel
Strand 4
A
35 40anti-parallel
Strand 5
A
46 51anti-parallel
Strand 6
A
54 56anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
19 24first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
68 71anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
161 162first strand
Strand 2
A
173 181anti-parallel
Strand 3
A
166 167anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
161 162first strand
Strand 2
A
173 181anti-parallel
Strand 3
A
133 142anti-parallel
Strand 4
A
122 125anti-parallel
Strand 5
B
200 208parallel
Strand 6
B
189 195anti-parallel
Strand 7
B
148 151anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
147 151first strand
Strand 2
A
189 194anti-parallel
Strand 3
A
201 208anti-parallel
Strand 4
B
122 125parallel
Strand 5
B
133 142anti-parallel
Strand 6
B
173 181anti-parallel
Strand 7
B
161 162anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
147 151first strand
Strand 2
A
189 194anti-parallel
Strand 3
A
201 208anti-parallel
Strand 4
B
122 125parallel
Strand 5
B
133 142anti-parallel
Strand 6
B
173 181anti-parallel
Strand 7
B
166 167anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
11 14first strand
Strand 2
B
104 115parallel
Strand 3
B
93 101anti-parallel
Strand 4
B
35 40anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
54 55anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
19 23first strand
Strand 2
B
80 84anti-parallel
Strand 3
B
68 71anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
3 6first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 12first strand
Strand 2
D
109 113parallel
Strand 3
D
92 95anti-parallel
Strand 4
D
34 40anti-parallel
Strand 5
D
44 52anti-parallel
Strand 6
D
57 59anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
97 98first strand
Strand 2
D
104 105anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
140 143first strand
Strand 2
D
154 161anti-parallel
Strand 3
D
206 212anti-parallel
Strand 4
D
199 201anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
146 149first strand
Strand 2
D
238 242parallel
Strand 3
D
220 226anti-parallel
Strand 4
D
170 174anti-parallel
Strand 5
D
181 185anti-parallel
Strand 6
D
189 190anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
146 149first strand
Strand 2
D
238 242parallel
Strand 3
D
220 226anti-parallel
Strand 4
D
233 234anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3 6first strand
Strand 2
C
17 25anti-parallel
Strand 3
C
78 84anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
10 11first strand
Strand 2
C
109 112parallel
Strand 3
C
92 95anti-parallel
Strand 4
C
34 40anti-parallel
Strand 5
C
44 52anti-parallel
Strand 6
C
57 60anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
97 98first strand
Strand 2
C
104 105anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
140 143first strand
Strand 2
C
154 161anti-parallel
Strand 3
C
206 212anti-parallel
Strand 4
C
199 201anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
146 149first strand
Strand 2
C
238 242parallel
Strand 3
C
220 226anti-parallel
Strand 4
C
170 174anti-parallel
Strand 5
C
181 185anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
146 149first strand
Strand 2
C
238 242parallel
Strand 3
C
220 226anti-parallel
Strand 4
C
233 234anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il