Analysis of interatomic Contacts of Structural Units in PDB entry:
4G3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4G3D entry

There are 4 chains in PDB entry 4G3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 332PRO 672
B
SER 332ARG 666
D
VAL 338GLN 657
E
SER 332SER 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 4G3D. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
332 342Right-handed alpha
Helix 2
2
A
349 361Right-handed alpha
Helix 3
3
A
438 443Right-handed alpha
Helix 4
4
A
476 484Right-handed alpha
Helix 5
5
A
488 509Right-handed alpha
Helix 6
6
A
517 519Right-handed 310
Helix 7
7
A
559 563Right-handed 310
Helix 8
8
A
564 569Right-handed alpha
Helix 9
9
A
575 592Right-handed alpha
Helix 10
10
A
603 611Right-handed alpha
Helix 11
11
A
613 618Right-handed 310
Helix 12
12
A
623 634Right-handed alpha
Helix 13
13
A
643 658Right-handed alpha
Helix 14
14
B
337 342Right-handed alpha
Helix 15
15
B
349 361Right-handed alpha
Helix 16
16
B
438 443Right-handed alpha
Helix 17
17
B
476 484Right-handed alpha
Helix 18
18
B
488 509Right-handed alpha
Helix 19
19
B
517 519Right-handed 310
Helix 20
20
B
559 563Right-handed 310
Helix 21
21
B
564 569Right-handed alpha
Helix 22
22
B
575 592Right-handed alpha
Helix 23
23
B
603 611Right-handed alpha
Helix 24
24
B
613 618Right-handed 310
Helix 25
25
B
623 634Right-handed alpha
Helix 26
26
B
643 658Right-handed alpha
Helix 27
27
D
349 361Right-handed alpha
Helix 28
28
D
438 443Right-handed alpha
Helix 29
29
D
476 484Right-handed alpha
Helix 30
30
D
488 508Right-handed alpha
Helix 31
31
D
517 519Right-handed 310
Helix 32
32
D
564 570Right-handed alpha
Helix 33
33
D
575 592Right-handed alpha
Helix 34
34
D
604 611Right-handed alpha
Helix 35
35
D
613 618Right-handed 310
Helix 36
36
D
623 634Right-handed alpha
Helix 37
37
D
643 657Right-handed alpha
Helix 38
38
E
336 342Right-handed alpha
Helix 39
39
E
349 361Right-handed alpha
Helix 40
40
E
438 443Right-handed alpha
Helix 41
41
E
476 484Right-handed alpha
Helix 42
42
E
488 509Right-handed alpha
Helix 43
43
E
517 519Right-handed 310
Helix 44
44
E
564 569Right-handed alpha
Helix 45
45
E
575 592Right-handed alpha
Helix 46
46
E
613 618Right-handed 310
Helix 47
47
E
623 634Right-handed alpha
Helix 48
48
E
643 658Right-handed alpha
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There are 12 sheets in PDB entry 4G3D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
345 347first strand
Strand 2
A
377 381parallel
Strand 3
A
455 461anti-parallel
Strand 4
A
464 469anti-parallel
Strand 5
A
425 432anti-parallel
Strand 6
A
414 419anti-parallel
Strand 7
A
399 401anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
511 512first strand
Strand 2
A
539 540anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
521 523first strand
Strand 2
A
530 532anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
345 347first strand
Strand 2
B
377 381parallel
Strand 3
B
455 461anti-parallel
Strand 4
B
464 469anti-parallel
Strand 5
B
425 432anti-parallel
Strand 6
B
414 419anti-parallel
Strand 7
B
399 401anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
511 512first strand
Strand 2
B
539 540anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
521 523first strand
Strand 2
B
530 532anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
345 347first strand
Strand 2
D
377 381parallel
Strand 3
D
455 461anti-parallel
Strand 4
D
464 469anti-parallel
Strand 5
D
425 432anti-parallel
Strand 6
D
414 419anti-parallel
Strand 7
D
399 401anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
511 512first strand
Strand 2
D
539 540anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
521 523first strand
Strand 2
D
530 532anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
345 347first strand
Strand 2
E
377 381parallel
Strand 3
E
455 461anti-parallel
Strand 4
E
464 469anti-parallel
Strand 5
E
425 432anti-parallel
Strand 6
E
414 419anti-parallel
Strand 7
E
399 401anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
511 512first strand
Strand 2
E
539 540anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
521 523first strand
Strand 2
E
530 532anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il