Analysis of interatomic Contacts of Structural Units in PDB entry:
4GBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GBM entry

There is 1 chain in PDB entry 4GBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 26PRO 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4GBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 51Right-handed alpha
Helix 2
2
A
68 76Right-handed alpha
Helix 3
3
A
83 94Right-handed alpha
Helix 4
4
A
96 111Right-handed alpha
Helix 5
5
A
113 126Right-handed alpha
Helix 6
6
A
135 139Right-handed 310
Helix 7
7
A
140 150Right-handed alpha
Helix 8
8
A
162 173Right-handed alpha
Helix 9
9
A
174 180Right-handed 310
Helix 10
10
A
185 206Right-handed alpha
Helix 11
11
A
207 208Right-handed 310
Helix 12
12
A
209 211Right-handed 310
Helix 13
13
A
218 224Right-handed alpha
Helix 14
14
A
224 237Right-handed alpha
Helix 15
15
A
241 246Right-handed 310
Helix 16
16
A
257 262Right-handed 310
Helix 17
17
A
268 272Right-handed 310
Helix 18
18
A
276 285Right-handed 310
Helix 19
19
A
293 303Right-handed alpha
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There are 2 sheets in PDB entry 4GBM. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
151 152parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
129 133parallel
Strand 3
A
32 36parallel
Strand 4
A
155 160parallel
Strand 5
A
213 217parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il