Analysis of interatomic Contacts of Structural Units in PDB entry:
4GLR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GLR entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 4GLR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 225ARG 230
A
PRO 232LYS 234
B
LYS 225ARG 230
B
PRO 232LYS 234
H
ALA 1SER 215
I
ALA 3THR 209
J
ALA 1LYS 214
K
ALA 3THR 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4GLR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
H
28 32Right-handed 310
Helix 2
2
H
83 87Right-handed 310
Helix 3
3
H
127 131Right-handed 310
Helix 4
4
H
156 158Right-handed 310
Helix 5
5
H
187 189Right-handed 310
Helix 6
6
H
201 204Right-handed 310
Helix 7
7
I
79 83Right-handed 310
Helix 8
8
I
121 127Right-handed alpha
Helix 9
9
I
181 187Right-handed alpha
Helix 10
10
J
28 32Right-handed 310
Helix 11
11
J
83 87Right-handed 310
Helix 12
12
J
156 158Right-handed 310
Helix 13
13
J
187 189Right-handed 310
Helix 14
14
J
201 203Right-handed 310
Helix 15
15
K
79 83Right-handed 310
Helix 16
16
K
121 127Right-handed alpha
Helix 17
17
K
181 187Right-handed alpha
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There are 23 sheets in PDB entry 4GLR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
100 103anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
120 124first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
176 185anti-parallel
Strand 4
H
163 165anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
120 124first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
176 185anti-parallel
Strand 4
H
169 170anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
151 154first strand
Strand 2
H
195 200anti-parallel
Strand 3
H
205 210anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
9 14first strand
Strand 2
I
102 106parallel
Strand 3
I
84 91anti-parallel
Strand 4
I
34 38anti-parallel
Strand 5
I
45 48anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
9 14first strand
Strand 2
I
102 106parallel
Strand 3
I
84 91anti-parallel
Strand 4
I
96 98anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
18 24first strand
Strand 2
I
70 76anti-parallel
Strand 3
I
62 67anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
114 118first strand
Strand 2
I
130 139anti-parallel
Strand 3
I
172 180anti-parallel
Strand 4
I
159 161anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
114 118first strand
Strand 2
I
130 139anti-parallel
Strand 3
I
172 180anti-parallel
Strand 4
I
165 166anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
153 154first strand
Strand 2
I
145 150anti-parallel
Strand 3
I
191 197anti-parallel
Strand 4
I
200 206anti-parallel
Strand 5
J
205 210anti-parallel
Strand 6
J
195 200anti-parallel
Strand 7
J
151 154anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
3 7first strand
Strand 2
J
18 25anti-parallel
Strand 3
J
77 82anti-parallel
Strand 4
J
67 72anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
10 12first strand
Strand 2
J
107 111parallel
Strand 3
J
88 95anti-parallel
Strand 4
J
34 39anti-parallel
Strand 5
J
45 51anti-parallel
Strand 6
J
57 59anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
10 12first strand
Strand 2
J
107 111parallel
Strand 3
J
88 95anti-parallel
Strand 4
J
100 103anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
120 124first strand
Strand 2
J
135 145anti-parallel
Strand 3
J
176 185anti-parallel
Strand 4
J
163 165anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
120 124first strand
Strand 2
J
135 145anti-parallel
Strand 3
J
176 185anti-parallel
Strand 4
J
169 170anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
9 14first strand
Strand 2
K
102 106parallel
Strand 3
K
84 91anti-parallel
Strand 4
K
34 38anti-parallel
Strand 5
K
45 48anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
9 14first strand
Strand 2
K
102 106parallel
Strand 3
K
84 91anti-parallel
Strand 4
K
96 98anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
18 24first strand
Strand 2
K
70 76anti-parallel
Strand 3
K
62 67anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
114 118first strand
Strand 2
K
130 139anti-parallel
Strand 3
K
172 180anti-parallel
Strand 4
K
159 161anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
114 118first strand
Strand 2
K
130 139anti-parallel
Strand 3
K
172 180anti-parallel
Strand 4
K
165 166anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
153 155first strand
Strand 2
K
145 150anti-parallel
Strand 3
K
191 197anti-parallel
Strand 4
K
200 206anti-parallel
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