Analysis of interatomic Contacts of Structural Units in PDB entry:
4GM6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GM6 entry

There are 4 chains in PDB entry 4GM6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	ASP 321
B	LYS 2	LYS 322
C	LYS 2	SER 323
D	LYS 2	LYS 291

There are 84 helices in PDB entry 4GM6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	25	Right-handed 310
Helix 2	2	A	34	46	Right-handed alpha
Helix 3	3	A	59	72	Right-handed alpha
Helix 4	4	A	109	114	Right-handed alpha
Helix 5	5	A	120	126	Right-handed alpha
Helix 6	6	A	135	141	Right-handed alpha
Helix 7	7	A	141	158	Right-handed alpha
Helix 8	8	A	174	186	Right-handed alpha
Helix 9	9	A	187	189	Right-handed 310
Helix 10	10	A	195	202	Right-handed alpha
Helix 11	11	A	211	220	Right-handed alpha
Helix 12	12	A	267	282	Right-handed alpha
Helix 13	13	A	285	301	Right-handed alpha
Helix 14	14	A	311	321	Right-handed alpha
Helix 15	15	B	21	25	Right-handed 310
Helix 16	16	B	34	46	Right-handed alpha
Helix 17	17	B	59	72	Right-handed alpha
Helix 18	18	B	109	114	Right-handed alpha
Helix 19	19	B	120	125	Right-handed alpha
Helix 20	20	B	135	140	Right-handed alpha
Helix 21	21	B	141	158	Right-handed alpha
Helix 22	22	B	174	186	Right-handed alpha
Helix 23	23	B	187	189	Right-handed 310
Helix 24	24	B	195	203	Right-handed alpha
Helix 25	25	B	211	220	Right-handed alpha
Helix 26	26	B	267	283	Right-handed alpha
Helix 27	27	B	285	301	Right-handed alpha
Helix 28	28	B	311	322	Right-handed alpha
Helix 29	29	C	21	25	Right-handed 310
Helix 30	30	C	34	46	Right-handed alpha
Helix 31	31	C	59	72	Right-handed alpha
Helix 32	32	C	109	114	Right-handed alpha
Helix 33	33	C	120	125	Right-handed alpha
Helix 34	34	C	135	141	Right-handed alpha
Helix 35	35	C	141	158	Right-handed alpha
Helix 36	36	C	174	186	Right-handed alpha
Helix 37	37	C	187	189	Right-handed 310
Helix 38	38	C	195	203	Right-handed alpha
Helix 39	39	C	211	220	Right-handed alpha
Helix 40	40	C	267	282	Right-handed alpha
Helix 41	41	C	285	301	Right-handed alpha
Helix 42	42	C	311	322	Right-handed alpha
Helix 43	43	D	21	25	Right-handed 310
Helix 44	44	D	34	46	Right-handed alpha
Helix 45	45	D	59	72	Right-handed alpha
Helix 46	46	D	109	114	Right-handed alpha
Helix 47	47	D	120	125	Right-handed alpha
Helix 48	48	D	135	141	Right-handed alpha
Helix 49	49	D	141	158	Right-handed alpha
Helix 50	50	D	174	186	Right-handed alpha
Helix 51	51	D	187	189	Right-handed 310
Helix 52	52	D	195	203	Right-handed alpha
Helix 53	53	D	211	220	Right-handed alpha
Helix 54	54	D	267	282	Right-handed alpha
Helix 55	55	D	285	301	Right-handed alpha
Helix 56	56	D	311	323	Right-handed alpha
Helix 57	57	E	21	25	Right-handed 310
Helix 58	58	E	34	46	Right-handed alpha
Helix 59	59	E	59	72	Right-handed alpha
Helix 60	60	E	109	114	Right-handed alpha
Helix 61	61	E	120	125	Right-handed alpha
Helix 62	62	E	135	140	Right-handed alpha
Helix 63	63	E	141	158	Right-handed alpha
Helix 64	64	E	174	186	Right-handed alpha
Helix 65	65	E	187	189	Right-handed 310
Helix 66	66	E	195	203	Right-handed alpha
Helix 67	67	E	211	220	Right-handed alpha
Helix 68	68	E	267	282	Right-handed alpha
Helix 69	69	E	285	301	Right-handed alpha
Helix 70	70	E	311	323	Right-handed alpha
Helix 71	71	F	21	25	Right-handed 310
Helix 72	72	F	34	46	Right-handed alpha
Helix 73	73	F	59	72	Right-handed alpha
Helix 74	74	F	109	114	Right-handed alpha
Helix 75	75	F	120	125	Right-handed alpha
Helix 76	76	F	135	140	Right-handed alpha
Helix 77	77	F	141	158	Right-handed alpha
Helix 78	78	F	174	186	Right-handed alpha
Helix 79	79	F	187	189	Right-handed 310
Helix 80	80	F	195	203	Right-handed alpha
Helix 81	81	F	211	220	Right-handed alpha
Helix 82	82	F	267	282	Right-handed alpha
Helix 83	83	F	285	301	Right-handed alpha
Helix 84	84	F	311	320	Right-handed alpha

There are 15 sheets in PDB entry 4GM6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	50	56	parallel
Strand 3	A	79	81	parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	50	56	parallel
Strand 3	A	3	7	parallel
Strand 4	A	128	134	parallel
Strand 5	A	161	165	parallel
Strand 6	A	191	193	parallel
Strand 7	A	225	235	parallel
Strand 8	A	238	247	anti-parallel
Strand 9	A	250	259	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	105	first strand
Strand 2	A	88	92	anti-parallel
Strand 3	A	11	15	parallel
Strand 4	A	27	33	anti-parallel
Strand 5	E	27	33	anti-parallel
Strand 6	E	11	15	anti-parallel
Strand 7	E	88	92	parallel
Strand 8	E	101	105	anti-parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	50	56	parallel
Strand 3	B	3	7	parallel
Strand 4	B	128	134	parallel
Strand 5	B	161	165	parallel
Strand 6	B	191	193	parallel
Strand 7	B	225	235	parallel
Strand 8	B	238	247	anti-parallel
Strand 9	B	250	253	anti-parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	81	first strand
Strand 2	B	50	56	parallel
Strand 3	B	3	7	parallel
Strand 4	B	128	134	parallel
Strand 5	B	161	165	parallel
Strand 6	B	191	193	parallel
Strand 7	B	225	235	parallel
Strand 8	B	238	247	anti-parallel
Strand 9	B	257	259	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	105	first strand
Strand 2	B	88	92	anti-parallel
Strand 3	B	11	15	parallel
Strand 4	B	27	33	anti-parallel
Strand 5	D	27	33	anti-parallel
Strand 6	D	11	15	anti-parallel
Strand 7	D	88	92	parallel
Strand 8	D	101	105	anti-parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	50	56	parallel
Strand 3	C	4	7	parallel
Strand 4	C	130	134	parallel
Strand 5	C	161	165	parallel
Strand 6	C	191	193	parallel
Strand 7	C	225	235	parallel
Strand 8	C	238	247	anti-parallel
Strand 9	C	250	253	anti-parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	50	56	parallel
Strand 3	C	4	7	parallel
Strand 4	C	130	134	parallel
Strand 5	C	161	165	parallel
Strand 6	C	191	193	parallel
Strand 7	C	225	235	parallel
Strand 8	C	238	247	anti-parallel
Strand 9	C	257	259	anti-parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	105	first strand
Strand 2	C	88	92	anti-parallel
Strand 3	C	11	15	parallel
Strand 4	C	27	33	anti-parallel
Strand 5	F	27	33	anti-parallel
Strand 6	F	11	15	anti-parallel
Strand 7	F	88	92	parallel
Strand 8	F	101	105	anti-parallel

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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	75	first strand
Strand 2	D	50	56	parallel
Strand 3	D	3	7	parallel
Strand 4	D	128	134	parallel
Strand 5	D	161	165	parallel
Strand 6	D	191	193	parallel
Strand 7	D	225	235	parallel
Strand 8	D	238	247	anti-parallel
Strand 9	D	250	253	anti-parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	81	first strand
Strand 2	D	50	56	parallel
Strand 3	D	3	7	parallel
Strand 4	D	128	134	parallel
Strand 5	D	161	165	parallel
Strand 6	D	191	193	parallel
Strand 7	D	225	235	parallel
Strand 8	D	238	247	anti-parallel
Strand 9	D	257	259	anti-parallel

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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	50	56	parallel
Strand 3	E	3	7	parallel
Strand 4	E	128	134	parallel
Strand 5	E	161	165	parallel
Strand 6	E	191	193	parallel
Strand 7	E	225	235	parallel
Strand 8	E	238	247	anti-parallel
Strand 9	E	250	253	anti-parallel

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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	81	first strand
Strand 2	E	50	56	parallel
Strand 3	E	3	7	parallel
Strand 4	E	128	134	parallel
Strand 5	E	161	165	parallel
Strand 6	E	191	193	parallel
Strand 7	E	225	235	parallel
Strand 8	E	238	247	anti-parallel
Strand 9	E	257	259	anti-parallel

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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	75	first strand
Strand 2	F	50	56	parallel
Strand 3	F	3	7	parallel
Strand 4	F	128	134	parallel
Strand 5	F	161	165	parallel
Strand 6	F	191	193	parallel
Strand 7	F	225	235	parallel
Strand 8	F	238	247	anti-parallel
Strand 9	F	250	253	anti-parallel

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There are 9 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	81	first strand
Strand 2	F	50	56	parallel
Strand 3	F	3	7	parallel
Strand 4	F	128	134	parallel
Strand 5	F	161	165	parallel
Strand 6	F	191	193	parallel
Strand 7	F	225	235	parallel
Strand 8	F	238	247	anti-parallel
Strand 9	F	257	259	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GM6

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GM6