Analysis of interatomic Contacts of Structural Units in PDB entry:
4GT4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GT4 entry

There are 2 chains in PDB entry 4GT4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 464ASN 751
B
LYS 464LEU 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4GT4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
469 471Right-handed 310
Helix 2
2
A
515 515Right-handed alpha
Helix 3
3
A
518 531Right-handed alpha
Helix 4
4
A
560 567Right-handed alpha
Helix 5
5
A
588 609Right-handed alpha
Helix 6
6
A
617 619Right-handed 310
Helix 7
7
A
625 627Right-handed 310
Helix 8
8
A
638 645Right-handed 310
Helix 9
9
A
655 659Right-handed 310
Helix 10
10
A
660 667Right-handed alpha
Helix 11
11
A
670 687Right-handed alpha
Helix 12
12
A
697 707Right-handed alpha
Helix 13
13
A
718 729Right-handed alpha
Helix 14
14
A
732 736Right-handed 310
Helix 15
15
A
738 748Right-handed alpha
Helix 16
16
B
469 471Right-handed 310
Helix 17
17
B
517 530Right-handed alpha
Helix 18
18
B
560 567Right-handed alpha
Helix 19
19
B
588 609Right-handed alpha
Helix 20
20
B
617 619Right-handed 310
Helix 21
21
B
625 627Right-handed 310
Helix 22
22
B
638 645Right-handed 310
Helix 23
23
B
655 659Right-handed 310
Helix 24
24
B
660 667Right-handed alpha
Helix 25
25
B
670 687Right-handed alpha
Helix 26
26
B
697 707Right-handed alpha
Helix 27
27
B
718 729Right-handed alpha
Helix 28
28
B
732 736Right-handed 310
Helix 29
29
B
738 749Right-handed alpha
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There are 5 sheets in PDB entry 4GT4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
473 481first strand
Strand 2
A
486 492anti-parallel
Strand 3
A
502 508anti-parallel
Strand 4
A
550 554anti-parallel
Strand 5
A
539 543anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
583 584first strand
Strand 2
B
668 669anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
621 623first strand
Strand 2
A
629 631anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
473 482first strand
Strand 2
B
485 492anti-parallel
Strand 3
B
503 508anti-parallel
Strand 4
B
550 554anti-parallel
Strand 5
B
539 543anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
621 623first strand
Strand 2
B
629 631anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il