Analysis of interatomic Contacts of Structural Units in PDB entry:
4GT5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GT5 entry

There is 1 chain in PDB entry 4GT5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 498ASP 793
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4GT5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
506 508Right-handed 310
Helix 2
2
A
553 555Right-handed 310
Helix 3
3
A
556 567Right-handed alpha
Helix 4
4
A
596 604Right-handed alpha
Helix 5
5
A
623 644Right-handed alpha
Helix 6
6
A
652 654Right-handed 310
Helix 7
7
A
671 676Right-handed alpha
Helix 8
8
A
677 680Right-handed 310
Helix 9
9
A
690 694Right-handed 310
Helix 10
10
A
695 700Right-handed alpha
Helix 11
11
A
705 722Right-handed alpha
Helix 12
12
A
732 742Right-handed alpha
Helix 13
13
A
753 764Right-handed alpha
Helix 14
14
A
767 771Right-handed 310
Helix 15
15
A
773 787Right-handed alpha
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There are 3 sheets in PDB entry 4GT5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
510 518first strand
Strand 2
A
522 529anti-parallel
Strand 3
A
539 546anti-parallel
Strand 4
A
586 590anti-parallel
Strand 5
A
575 579anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
656 659first strand
Strand 2
A
663 666anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
681 682first strand
Strand 2
A
688 689anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il