Analysis of interatomic Contacts of Structural Units in PDB entry:
4GV0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GV0 entry

There is 1 chain in PDB entry 4GV0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 176HIS 532
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 4GV0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
186 197Right-handed alpha
Helix 2
2
A
198 209Right-handed alpha
Helix 3
3
A
222 241Right-handed alpha
Helix 4
4
A
249 261Right-handed alpha
Helix 5
5
A
275 299Right-handed alpha
Helix 6
6
A
302 308Right-handed alpha
Helix 7
7
A
313 322Right-handed alpha
Helix 8
8
A
335 347Right-handed alpha
Helix 9
9
A
365 372Right-handed alpha
Helix 10
10
A
387 389Right-handed 310
Helix 11
11
A
390 398Right-handed alpha
Helix 12
12
A
418 424Right-handed alpha
Helix 13
13
A
479 482Right-handed 310
Helix 14
14
A
503 506Right-handed 310
Helix 15
15
A
519 521Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 4GV0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
310 311parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 328first strand
Strand 2
A
354 362anti-parallel
Strand 3
A
523 532anti-parallel
Strand 4
A
434 445anti-parallel
Strand 5
A
379 385anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 328first strand
Strand 2
A
354 362anti-parallel
Strand 3
A
523 532anti-parallel
Strand 4
A
434 445anti-parallel
Strand 5
A
429 431anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 415first strand
Strand 2
A
514 517anti-parallel
Strand 3
A
468 471anti-parallel
Strand 4
A
449 452parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 477first strand
Strand 2
A
499 501anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 487first strand
Strand 2
A
490 494anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il