Analysis of interatomic Contacts of Structural Units in PDB entry:
4HJ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4HJ1 entry

There are 4 chains in PDB entry 4HJ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 688	ASP 1118
B	ASP 688	LEU 1114
C	ASP 688	ILE 1117
D	ASP 688	SER 716

There are 22 helices in PDB entry 4HJ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	698	700	Right-handed 310
Helix 2	2	A	797	804	Right-handed 310
Helix 3	3	A	820	824	Right-handed 310
Helix 4	4	A	899	903	Right-handed 310
Helix 5	5	A	936	942	Right-handed alpha
Helix 6	6	A	971	979	Right-handed alpha
Helix 7	7	B	797	804	Right-handed 310
Helix 8	8	B	820	824	Right-handed 310
Helix 9	9	B	899	903	Right-handed 310
Helix 10	10	B	936	942	Right-handed alpha
Helix 11	11	B	971	980	Right-handed alpha
Helix 12	12	C	820	824	Right-handed 310
Helix 13	13	C	899	903	Right-handed 310
Helix 14	14	C	936	942	Right-handed alpha
Helix 15	15	C	971	980	Right-handed alpha
Helix 16	16	D	698	700	Right-handed 310
Helix 17	17	D	784	790	Right-handed alpha
Helix 18	18	D	797	801	Right-handed 310
Helix 19	19	D	820	824	Right-handed 310
Helix 20	20	D	899	903	Right-handed 310
Helix 21	21	D	936	942	Right-handed alpha
Helix 22	22	D	971	980	Right-handed alpha

There are 32 sheets in PDB entry 4HJ1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	691	696	first strand
Strand 2	A	729	735	parallel
Strand 3	A	742	764	anti-parallel
Strand 4	A	847	864	anti-parallel
Strand 5	A	904	908	anti-parallel
Strand 6	A	912	916	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	870	875	first strand
Strand 2	A	847	864	anti-parallel
Strand 3	A	742	764	anti-parallel
Strand 4	A	999	1003	anti-parallel
Strand 5	A	988	992	anti-parallel
Strand 6	A	983	985	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	706	first strand
Strand 2	A	711	722	anti-parallel
Strand 3	A	1009	1021	anti-parallel
Strand 4	A	886	893	anti-parallel
Strand 5	A	880	883	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	767	776	first strand
Strand 2	A	831	841	anti-parallel
Strand 3	A	810	817	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	932	933	first strand
Strand 2	A	948	949	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	954	959	first strand
Strand 2	A	962	967	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1030	1038	first strand
Strand 2	A	1046	1054	anti-parallel
Strand 3	A	1078	1086	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1070	1075	first strand
Strand 2	A	1058	1064	anti-parallel
Strand 3	A	1092	1100	anti-parallel
Strand 4	A	1106	1113	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	691	696	first strand
Strand 2	B	729	735	parallel
Strand 3	B	742	764	anti-parallel
Strand 4	B	847	864	anti-parallel
Strand 5	B	904	907	anti-parallel
Strand 6	B	913	916	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	870	875	first strand
Strand 2	B	847	864	anti-parallel
Strand 3	B	742	764	anti-parallel
Strand 4	B	999	1003	anti-parallel
Strand 5	B	988	992	anti-parallel
Strand 6	B	983	985	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	705	first strand
Strand 2	B	712	722	anti-parallel
Strand 3	B	1009	1021	anti-parallel
Strand 4	B	886	893	anti-parallel
Strand 5	B	880	882	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	767	776	first strand
Strand 2	B	831	841	anti-parallel
Strand 3	B	810	817	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	932	933	first strand
Strand 2	B	948	949	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	954	959	first strand
Strand 2	B	962	967	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1030	1036	first strand
Strand 2	B	1046	1060	anti-parallel
Strand 3	B	1073	1086	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1092	1097	first strand
Strand 2	B	1108	1113	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	691	696	first strand
Strand 2	C	729	735	parallel
Strand 3	C	742	764	anti-parallel
Strand 4	C	847	864	anti-parallel
Strand 5	C	904	907	anti-parallel
Strand 6	C	913	916	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	870	875	first strand
Strand 2	C	847	864	anti-parallel
Strand 3	C	742	764	anti-parallel
Strand 4	C	999	1003	anti-parallel
Strand 5	C	988	992	anti-parallel
Strand 6	C	983	985	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	702	706	first strand
Strand 2	C	711	722	anti-parallel
Strand 3	C	1009	1021	anti-parallel
Strand 4	C	886	893	anti-parallel
Strand 5	C	880	883	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	767	776	first strand
Strand 2	C	831	841	anti-parallel
Strand 3	C	810	817	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	932	933	first strand
Strand 2	C	948	949	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	954	959	first strand
Strand 2	C	962	967	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1030	1038	first strand
Strand 2	C	1046	1054	anti-parallel
Strand 3	C	1078	1086	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1070	1075	first strand
Strand 2	C	1058	1064	anti-parallel
Strand 3	C	1092	1100	anti-parallel
Strand 4	C	1106	1113	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	691	696	first strand
Strand 2	D	729	735	parallel
Strand 3	D	742	764	anti-parallel
Strand 4	D	847	864	anti-parallel
Strand 5	D	904	908	anti-parallel
Strand 6	D	912	916	anti-parallel

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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	870	875	first strand
Strand 2	D	847	864	anti-parallel
Strand 3	D	742	764	anti-parallel
Strand 4	D	999	1003	anti-parallel
Strand 5	D	988	992	anti-parallel
Strand 6	D	983	985	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	702	706	first strand
Strand 2	D	711	722	anti-parallel
Strand 3	D	1010	1021	anti-parallel
Strand 4	D	886	891	anti-parallel
Strand 5	D	880	883	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	767	776	first strand
Strand 2	D	831	841	anti-parallel
Strand 3	D	810	817	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	932	933	first strand
Strand 2	D	948	949	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	954	959	first strand
Strand 2	D	962	967	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1030	1038	first strand
Strand 2	D	1046	1054	anti-parallel
Strand 3	D	1078	1086	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1070	1075	first strand
Strand 2	D	1058	1064	anti-parallel
Strand 3	D	1092	1100	anti-parallel
Strand 4	D	1106	1113	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4HJ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
4HJ1