Analysis of interatomic Contacts of Structural Units in PDB entry:
4HJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HJW entry

There are 3 chains in PDB entry 4HJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLU 374
B
 SER 0GLU 374
C
 SER 0ALA 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 4HJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 5Right-handed alpha
Helix 2
2
A
17 26Right-handed alpha
Helix 3
3
A
47 49Right-handed 310
Helix 4
4
A
50 60Right-handed alpha
Helix 5
5
A
71 76Right-handed alpha
Helix 6
6
A
76 87Right-handed alpha
Helix 7
7
A
105 127Right-handed alpha
Helix 8
8
A
142 156Right-handed alpha
Helix 9
9
A
175 177Right-handed 310
Helix 10
10
A
178 189Right-handed alpha
Helix 11
11
A
201 206Right-handed 310
Helix 12
12
A
208 213Right-handed 310
Helix 13
13
A
214 220Right-handed alpha
Helix 14
14
A
220 236Right-handed alpha
Helix 15
15
A
237 242Right-handed alpha
Helix 16
16
A
251 254Right-handed 310
Helix 17
17
A
255 269Right-handed alpha
Helix 18
18
A
270 276Right-handed alpha
Helix 19
19
A
285 293Right-handed alpha
Helix 20
20
A
302 314Right-handed alpha
Helix 21
21
A
338 353Right-handed alpha
Helix 22
22
A
356 363Right-handed alpha
Helix 23
23
A
364 371Right-handed alpha
Helix 24
24
B
17 26Right-handed alpha
Helix 25
25
B
47 49Right-handed 310
Helix 26
26
B
50 58Right-handed alpha
Helix 27
27
B
71 76Right-handed alpha
Helix 28
28
B
76 87Right-handed alpha
Helix 29
29
B
105 127Right-handed alpha
Helix 30
30
B
142 156Right-handed alpha
Helix 31
31
B
175 177Right-handed 310
Helix 32
32
B
178 188Right-handed alpha
Helix 33
33
B
201 213Right-handed 310
Helix 34
34
B
214 220Right-handed alpha
Helix 35
35
B
220 236Right-handed alpha
Helix 36
36
B
237 242Right-handed alpha
Helix 37
37
B
251 254Right-handed 310
Helix 38
38
B
255 269Right-handed alpha
Helix 39
39
B
270 276Right-handed alpha
Helix 40
40
B
285 293Right-handed alpha
Helix 41
41
B
302 314Right-handed alpha
Helix 42
42
B
338 353Right-handed alpha
Helix 43
43
B
356 364Right-handed alpha
Helix 44
44
B
364 371Right-handed alpha
Helix 45
45
C
17 26Right-handed alpha
Helix 46
46
C
47 49Right-handed 310
Helix 47
47
C
50 60Right-handed alpha
Helix 48
48
C
71 76Right-handed alpha
Helix 49
49
C
76 87Right-handed alpha
Helix 50
50
C
105 127Right-handed alpha
Helix 51
51
C
142 156Right-handed alpha
Helix 52
52
C
175 177Right-handed 310
Helix 53
53
C
178 188Right-handed alpha
Helix 54
54
C
201 206Right-handed 310
Helix 55
55
C
208 213Right-handed 310
Helix 56
56
C
214 220Right-handed alpha
Helix 57
57
C
220 236Right-handed alpha
Helix 58
58
C
237 242Right-handed alpha
Helix 59
59
C
251 254Right-handed 310
Helix 60
60
C
255 269Right-handed alpha
Helix 61
61
C
270 276Right-handed alpha
Helix 62
62
C
285 293Right-handed alpha
Helix 63
63
C
302 314Right-handed alpha
Helix 64
64
C
338 353Right-handed alpha
Helix 65
65
C
356 364Right-handed alpha
Helix 66
66
C
364 371Right-handed alpha
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There are 6 sheets in PDB entry 4HJW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 15first strand
Strand 2
A
91 96parallel
Strand 3
A
131 136parallel
Strand 4
A
159 164parallel
Strand 5
A
191 194parallel
Strand 6
A
247 249parallel
Strand 7
A
294 297parallel
Strand 8
A
318 319parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
43 45anti-parallel
Strand 3
A
68 69anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 15first strand
Strand 2
B
91 96parallel
Strand 3
B
131 136parallel
Strand 4
B
159 164parallel
Strand 5
B
191 194parallel
Strand 6
B
247 249parallel
Strand 7
B
294 297parallel
Strand 8
B
318 319parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
43 45anti-parallel
Strand 3
B
68 69anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 15first strand
Strand 2
C
91 96parallel
Strand 3
C
131 135parallel
Strand 4
C
159 164parallel
Strand 5
C
191 194parallel
Strand 6
C
247 249parallel
Strand 7
C
294 297parallel
Strand 8
C
318 319parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 35first strand
Strand 2
C
42 45anti-parallel
Strand 3
C
68 69anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il