Analysis of interatomic Contacts of Structural Units in PDB entry:
4I93


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4I93 entry

There are 2 chains in PDB entry 4I93 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 40PRO 328
B
 GLN 40PRO 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 4I93. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 53Right-handed alpha
Helix 2
2
A
57 61Right-handed 310
Helix 3
3
A
96 109Right-handed alpha
Helix 4
4
A
123 127Right-handed 310
Helix 5
5
A
139 146Right-handed alpha
Helix 6
6
A
153 174Right-handed alpha
Helix 7
7
A
200 203Right-handed 310
Helix 8
8
A
215 219Right-handed 310
Helix 9
9
A
220 227Right-handed alpha
Helix 10
10
A
230 248Right-handed alpha
Helix 11
11
A
252 262Right-handed alpha
Helix 12
12
A
264 269Right-handed alpha
Helix 13
13
A
270 274Right-handed 310
Helix 14
14
A
278 293Right-handed alpha
Helix 15
15
A
296 300Right-handed 310
Helix 16
16
A
302 311Right-handed alpha
Helix 17
17
A
312 314Right-handed 310
Helix 18
18
A
320 326Right-handed alpha
Helix 19
19
B
45 53Right-handed alpha
Helix 20
20
B
57 61Right-handed 310
Helix 21
21
B
96 109Right-handed alpha
Helix 22
22
B
139 146Right-handed alpha
Helix 23
23
B
153 174Right-handed alpha
Helix 24
24
B
200 203Right-handed 310
Helix 25
25
B
220 227Right-handed alpha
Helix 26
26
B
230 248Right-handed alpha
Helix 27
27
B
252 262Right-handed alpha
Helix 28
28
B
264 269Right-handed alpha
Helix 29
29
B
270 274Right-handed 310
Helix 30
30
B
278 293Right-handed alpha
Helix 31
31
B
296 300Right-handed 310
Helix 32
32
B
302 311Right-handed alpha
Helix 33
33
B
312 314Right-handed 310
Helix 34
34
B
320 326Right-handed alpha
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There are 4 sheets in PDB entry 4I93. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
118 122parallel
Strand 3
A
129 133anti-parallel
Strand 4
A
83 88anti-parallel
Strand 5
A
73 77anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
195 198parallel
Strand 3
A
187 189anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 43first strand
Strand 2
B
118 122parallel
Strand 3
B
129 133anti-parallel
Strand 4
B
83 88anti-parallel
Strand 5
B
72 77anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
195 198parallel
Strand 3
B
187 189anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il