Analysis of interatomic Contacts of Structural Units in PDB entry:
4IFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4IFP entry

There are 3 chains in PDB entry 4IFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 2LEU 459
B
LYS 2LEU 459
C
LYS 2LEU 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 73 helices in PDB entry 4IFP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
17 33Right-handed alpha
Helix 2
2
A
43 55Right-handed alpha
Helix 3
3
A
67 74Right-handed alpha
Helix 4
4
A
83 89Right-handed alpha
Helix 5
5
A
91 98Right-handed alpha
Helix 6
6
A
132 142Right-handed alpha
Helix 7
7
A
154 165Right-handed alpha
Helix 8
8
A
186 202Right-handed alpha
Helix 9
9
A
210 220Right-handed alpha
Helix 10
10
A
229 231Right-handed 310
Helix 11
11
A
232 239Right-handed alpha
Helix 12
12
A
273 284Right-handed alpha
Helix 13
13
A
287 298Right-handed alpha
Helix 14
14
A
305 313Right-handed alpha
Helix 15
15
A
315 328Right-handed alpha
Helix 16
16
A
336 353Right-handed alpha
Helix 17
17
A
357 372Right-handed alpha
Helix 18
18
A
373 378Right-handed alpha
Helix 19
19
A
378 386Right-handed alpha
Helix 20
20
A
388 397Right-handed alpha
Helix 21
21
A
402 411Right-handed alpha
Helix 22
22
A
414 427Right-handed alpha
Helix 23
23
A
430 445Right-handed alpha
Helix 24
24
A
445 459Right-handed alpha
Helix 25
25
B
17 33Right-handed alpha
Helix 26
26
B
43 54Right-handed alpha
Helix 27
27
B
67 74Right-handed alpha
Helix 28
28
B
83 89Right-handed alpha
Helix 29
29
B
91 98Right-handed alpha
Helix 30
30
B
132 142Right-handed alpha
Helix 31
31
B
154 165Right-handed alpha
Helix 32
32
B
186 202Right-handed alpha
Helix 33
33
B
210 220Right-handed alpha
Helix 34
34
B
229 231Right-handed 310
Helix 35
35
B
232 239Right-handed alpha
Helix 36
36
B
273 284Right-handed alpha
Helix 37
37
B
287 298Right-handed alpha
Helix 38
38
B
305 313Right-handed alpha
Helix 39
39
B
315 328Right-handed alpha
Helix 40
40
B
336 353Right-handed alpha
Helix 41
41
B
357 372Right-handed alpha
Helix 42
42
B
373 378Right-handed alpha
Helix 43
43
B
378 386Right-handed alpha
Helix 44
44
B
388 397Right-handed alpha
Helix 45
45
B
402 412Right-handed alpha
Helix 46
46
B
414 427Right-handed alpha
Helix 47
47
B
430 445Right-handed alpha
Helix 48
48
B
445 459Right-handed alpha
Helix 49
49
C
17 33Right-handed alpha
Helix 50
50
C
43 54Right-handed alpha
Helix 51
51
C
67 74Right-handed alpha
Helix 52
52
C
83 88Right-handed alpha
Helix 53
53
C
91 98Right-handed alpha
Helix 54
54
C
132 142Right-handed alpha
Helix 55
55
C
154 157Right-handed 310
Helix 56
56
C
158 165Right-handed alpha
Helix 57
57
C
186 202Right-handed alpha
Helix 58
58
C
210 220Right-handed alpha
Helix 59
59
C
229 231Right-handed 310
Helix 60
60
C
232 239Right-handed alpha
Helix 61
61
C
273 284Right-handed alpha
Helix 62
62
C
287 298Right-handed alpha
Helix 63
63
C
305 313Right-handed alpha
Helix 64
64
C
315 328Right-handed alpha
Helix 65
65
C
336 353Right-handed alpha
Helix 66
66
C
357 372Right-handed alpha
Helix 67
67
C
373 378Right-handed alpha
Helix 68
68
C
378 386Right-handed alpha
Helix 69
69
C
388 397Right-handed alpha
Helix 70
70
C
402 412Right-handed alpha
Helix 71
71
C
414 427Right-handed alpha
Helix 72
72
C
430 445Right-handed alpha
Helix 73
73
C
445 458Right-handed alpha
Back to top of page

There are 15 sheets in PDB entry 4IFP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
36 39first strand
Strand 2
A
8 11parallel
Strand 3
A
60 64parallel
Strand 4
A
259 267anti-parallel
Strand 5
A
107 112anti-parallel
Strand 6
A
302 303anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
36 39first strand
Strand 2
A
8 11parallel
Strand 3
A
60 64parallel
Strand 4
A
259 267anti-parallel
Strand 5
A
329 330parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
99 100first strand
Strand 2
A
103 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
146 148first strand
Strand 2
A
223 228parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
168 173first strand
Strand 2
A
176 183anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
36 39first strand
Strand 2
B
8 11parallel
Strand 3
B
60 64parallel
Strand 4
B
259 267anti-parallel
Strand 5
B
107 112anti-parallel
Strand 6
B
302 303anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
36 39first strand
Strand 2
B
8 11parallel
Strand 3
B
60 64parallel
Strand 4
B
259 267anti-parallel
Strand 5
B
329 330parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
99 100first strand
Strand 2
B
103 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
146 148first strand
Strand 2
B
223 228parallel
Strand 3
B
115 119anti-parallel
Strand 4
B
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
168 173first strand
Strand 2
B
176 183anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
36 39first strand
Strand 2
C
8 11parallel
Strand 3
C
60 64parallel
Strand 4
C
259 267anti-parallel
Strand 5
C
107 112anti-parallel
Strand 6
C
302 303anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
36 39first strand
Strand 2
C
8 11parallel
Strand 3
C
60 64parallel
Strand 4
C
259 267anti-parallel
Strand 5
C
329 330parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
99 100first strand
Strand 2
C
103 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
146 148first strand
Strand 2
C
223 228parallel
Strand 3
C
115 119anti-parallel
Strand 4
C
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
168 173first strand
Strand 2
C
176 183anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il