Analysis of interatomic Contacts of Structural Units in PDB entry:
4J1O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J1O entry

There are 2 chains in PDB entry 4J1O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1SER 369
B
MET 1SER 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4J1O. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
60 72Right-handed alpha
Helix 2
2
A
73 76Right-handed 310
Helix 3
3
A
82 92Right-handed alpha
Helix 4
4
A
97 117Right-handed alpha
Helix 5
5
A
119 124Right-handed 310
Helix 6
6
A
142 157Right-handed alpha
Helix 7
7
A
169 185Right-handed alpha
Helix 8
8
A
200 211Right-handed alpha
Helix 9
9
A
224 232Right-handed alpha
Helix 10
10
A
233 235Right-handed 310
Helix 11
11
A
247 257Right-handed alpha
Helix 12
12
A
267 271Right-handed alpha
Helix 13
13
A
272 286Right-handed alpha
Helix 14
14
A
298 310Right-handed alpha
Helix 15
15
A
311 312Right-handed 310
Helix 16
16
A
313 315Right-handed 310
Helix 17
17
A
323 327Right-handed 310
Helix 18
18
A
357 361Right-handed 310
Helix 19
19
B
60 72Right-handed alpha
Helix 20
20
B
73 76Right-handed 310
Helix 21
21
B
82 92Right-handed alpha
Helix 22
22
B
97 117Right-handed alpha
Helix 23
23
B
119 124Right-handed alpha
Helix 24
24
B
142 157Right-handed alpha
Helix 25
25
B
169 185Right-handed alpha
Helix 26
26
B
200 211Right-handed alpha
Helix 27
27
B
224 232Right-handed alpha
Helix 28
28
B
233 235Right-handed 310
Helix 29
29
B
247 257Right-handed alpha
Helix 30
30
B
267 271Right-handed alpha
Helix 31
31
B
272 286Right-handed alpha
Helix 32
32
B
298 310Right-handed alpha
Helix 33
33
B
311 312Right-handed 310
Helix 34
34
B
313 315Right-handed 310
Helix 35
35
B
323 327Right-handed 310
Helix 36
36
B
357 362Right-handed 310
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There are 8 sheets in PDB entry 4J1O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
44 49first strand
Strand 2
A
29 39anti-parallel
Strand 3
A
3 14anti-parallel
Strand 4
A
366 368anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 22first strand
Strand 2
A
25 27anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
131 133first strand
Strand 2
A
343 345anti-parallel
Strand 3
A
339 340anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
136 138first strand
Strand 2
A
160 164parallel
Strand 3
A
190 194parallel
Strand 4
A
216 219parallel
Strand 5
A
239 241parallel
Strand 6
A
262 266parallel
Strand 7
A
290 293parallel
Strand 8
A
317 319parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
44 49first strand
Strand 2
B
29 39anti-parallel
Strand 3
B
3 14anti-parallel
Strand 4
B
366 368anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
20 22first strand
Strand 2
B
25 27anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
131 133first strand
Strand 2
B
343 345anti-parallel
Strand 3
B
339 340anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
136 138first strand
Strand 2
B
160 164parallel
Strand 3
B
190 194parallel
Strand 4
B
216 219parallel
Strand 5
B
239 241parallel
Strand 6
B
262 266parallel
Strand 7
B
290 293parallel
Strand 8
B
317 319parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il