Analysis of interatomic Contacts of Structural Units in PDB entry:
4J5X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J5X entry

There are 4 chains in PDB entry 4J5X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLU 228GLU 486
C
 GLU 228GLU 486
A
 GLN 141GLU 458
B
 GLY 139SER 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 4J5X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
231 243Right-handed alpha
Helix 2
2
D
247 254Right-handed alpha
Helix 3
3
D
263 286Right-handed alpha
Helix 4
4
D
288 292Right-handed 310
Helix 5
5
D
293 317Right-handed alpha
Helix 6
6
D
337 341Right-handed 310
Helix 7
7
D
342 353Right-handed alpha
Helix 8
8
D
353 360Right-handed alpha
Helix 9
9
D
363 376Right-handed alpha
Helix 10
10
D
385 408Right-handed alpha
Helix 11
11
D
413 420Right-handed alpha
Helix 12
12
D
420 443Right-handed alpha
Helix 13
13
D
448 455Right-handed alpha
Helix 14
14
D
478 484Right-handed alpha
Helix 15
15
C
231 243Right-handed alpha
Helix 16
16
C
247 254Right-handed alpha
Helix 17
17
C
263 286Right-handed alpha
Helix 18
18
C
293 317Right-handed alpha
Helix 19
19
C
342 353Right-handed alpha
Helix 20
20
C
353 360Right-handed alpha
Helix 21
21
C
363 376Right-handed alpha
Helix 22
22
C
385 408Right-handed alpha
Helix 23
23
C
413 420Right-handed alpha
Helix 24
24
C
420 443Right-handed alpha
Helix 25
25
C
448 456Right-handed alpha
Helix 26
26
C
478 484Right-handed alpha
Helix 27
27
A
144 162Right-handed alpha
Helix 28
28
A
193 208Right-handed alpha
Helix 29
29
A
235 253Right-handed alpha
Helix 30
30
A
261 267Right-handed alpha
Helix 31
31
A
268 289Right-handed alpha
Helix 32
32
A
317 320Right-handed 310
Helix 33
33
A
321 334Right-handed alpha
Helix 34
34
A
336 349Right-handed alpha
Helix 35
35
A
358 380Right-handed alpha
Helix 36
36
A
390 418Right-handed alpha
Helix 37
37
A
422 430Right-handed alpha
Helix 38
38
A
445 449Right-handed alpha
Helix 39
39
A
449 455Right-handed alpha
Helix 40
40
B
144 162Right-handed alpha
Helix 41
41
B
196 207Right-handed alpha
Helix 42
42
B
239 260Right-handed alpha
Helix 43
43
B
261 267Right-handed alpha
Helix 44
44
B
268 291Right-handed alpha
Helix 45
45
B
321 333Right-handed alpha
Helix 46
46
B
336 349Right-handed alpha
Helix 47
47
B
358 380Right-handed alpha
Helix 48
48
B
388 418Right-handed alpha
Helix 49
49
B
422 428Right-handed alpha
Helix 50
50
B
444 449Right-handed alpha
Helix 51
51
B
449 456Right-handed alpha
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There are 6 sheets in PDB entry 4J5X. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
324 325first strand
Strand 2
D
331 332anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 325first strand
Strand 2
C
331 332anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
307 308anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
222 226anti-parallel
Strand 3
B
222 226anti-parallel
Strand 4
B
213 216anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
298 299anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 293first strand
Strand 2
B
298 301anti-parallel
Strand 3
B
304 306anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il