Analysis of interatomic Contacts of Structural Units in PDB entry:
4J96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J96 entry

There are 2 chains in PDB entry 4J96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 461ASN 766
B
 GLY 462ASN 766
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 4J96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
477 479Right-handed 310
Helix 2
2
A
524 542Right-handed alpha
Helix 3
3
A
571 578Right-handed alpha
Helix 4
4
A
593 597Right-handed 310
Helix 5
5
A
599 620Right-handed alpha
Helix 6
6
A
628 630Right-handed 310
Helix 7
7
A
644 648Right-handed 310
Helix 8
8
A
666 670Right-handed 310
Helix 9
9
A
671 678Right-handed alpha
Helix 10
10
A
681 698Right-handed alpha
Helix 11
11
A
708 718Right-handed alpha
Helix 12
12
A
729 740Right-handed alpha
Helix 13
13
A
743 747Right-handed 310
Helix 14
14
A
749 766Right-handed alpha
Helix 15
15
B
477 479Right-handed 310
Helix 16
16
B
524 542Right-handed alpha
Helix 17
17
B
571 578Right-handed alpha
Helix 18
18
B
599 620Right-handed alpha
Helix 19
19
B
628 630Right-handed 310
Helix 20
20
B
666 670Right-handed 310
Helix 21
21
B
671 678Right-handed alpha
Helix 22
22
B
681 698Right-handed alpha
Helix 23
23
B
708 718Right-handed alpha
Helix 24
24
B
729 740Right-handed alpha
Helix 25
25
B
743 747Right-handed 310
Helix 26
26
B
749 766Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4J96. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 489first strand
Strand 2
A
494 501anti-parallel
Strand 3
A
511 518anti-parallel
Strand 4
A
561 565anti-parallel
Strand 5
A
550 554anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
649 650anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 634first strand
Strand 2
A
640 642anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 658first strand
Strand 2
A
679 680anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
481 489first strand
Strand 2
B
494 501anti-parallel
Strand 3
B
511 518anti-parallel
Strand 4
B
561 565anti-parallel
Strand 5
B
550 554anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
622 623first strand
Strand 2
B
649 650anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
632 634first strand
Strand 2
B
640 642anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
657 658first strand
Strand 2
B
679 680anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il