Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 4J9D entry
There are 6 chains in PDB entry 4J9D
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
LEU 65 | ASN 120 |
B
|
ALA 1 | PRO 10 |
C
|
LEU 65 | ASN 120 |
D
|
ALA 1 | PRO 10 |
E
|
ASP 62 | ASN 120 |
F
|
ALA 1 | PRO 10 |
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There are no helices in PDB entry
4J9D
There are
3 sheets in PDB entry 4J9D. Click on sheet of
interest to get list of strands forming it:
A,
B,
C,
There are 5
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 107 |
112 | first strand |
| Strand 2 |
A
| 99 |
104 | anti-parallel |
| Strand 3 |
A
| 87 |
93 | anti-parallel |
| Strand 4 |
A
| 66 |
68 | anti-parallel |
| Strand 5 |
A
| 116 |
118 | anti-parallel |
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There are 5
strands in B sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
C
| 107 |
112 | first strand |
| Strand 2 |
C
| 99 |
104 | anti-parallel |
| Strand 3 |
C
| 87 |
93 | anti-parallel |
| Strand 4 |
C
| 66 |
68 | anti-parallel |
| Strand 5 |
C
| 116 |
118 | anti-parallel |
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There are 5
strands in C sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
E
| 107 |
112 | first strand |
| Strand 2 |
E
| 99 |
104 | anti-parallel |
| Strand 3 |
E
| 87 |
93 | anti-parallel |
| Strand 4 |
E
| 65 |
68 | anti-parallel |
| Strand 5 |
E
| 116 |
118 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il