Analysis of interatomic Contacts of Structural Units in PDB entry:
4JHN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JHN entry

There are 4 chains in PDB entry 4JHN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 8	ARG 369
B	MET 8	ARG 369
C	LEU 7	HIS 368
D	LEU 7	ARG 369

There are 19 helices in PDB entry 4JHN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	82	85	Right-handed 310
Helix 2	2	A	225	232	Right-handed 310
Helix 3	3	A	322	326	Right-handed 310
Helix 4	4	A	344	347	Right-handed 310
Helix 5	5	B	82	85	Right-handed 310
Helix 6	6	B	225	232	Right-handed 310
Helix 7	7	B	290	293	Right-handed 310
Helix 8	8	B	322	326	Right-handed 310
Helix 9	9	B	344	347	Right-handed 310
Helix 10	10	C	82	85	Right-handed 310
Helix 11	11	C	225	232	Right-handed 310
Helix 12	12	C	290	293	Right-handed 310
Helix 13	13	C	322	326	Right-handed 310
Helix 14	14	C	344	347	Right-handed 310
Helix 15	15	D	82	85	Right-handed 310
Helix 16	16	D	225	232	Right-handed 310
Helix 17	17	D	290	293	Right-handed 310
Helix 18	18	D	322	326	Right-handed 310
Helix 19	19	D	344	347	Right-handed 310

There are 28 sheets in PDB entry 4JHN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	13	18	anti-parallel
Strand 3	A	360	367	anti-parallel
Strand 4	A	349	356	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	42	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	56	61	anti-parallel
Strand 4	A	74	80	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	94	first strand
Strand 2	A	98	103	anti-parallel
Strand 3	A	108	112	anti-parallel
Strand 4	A	127	132	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	147	first strand
Strand 2	A	151	156	anti-parallel
Strand 3	A	161	166	anti-parallel
Strand 4	A	179	185	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	197	first strand
Strand 2	A	201	206	anti-parallel
Strand 3	A	211	215	anti-parallel
Strand 4	A	236	237	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	250	first strand
Strand 2	A	254	259	anti-parallel
Strand 3	A	263	268	anti-parallel
Strand 4	A	282	288	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	302	first strand
Strand 2	A	306	311	anti-parallel
Strand 3	A	316	320	anti-parallel
Strand 4	A	337	342	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	13	18	anti-parallel
Strand 3	B	360	367	anti-parallel
Strand 4	B	349	356	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	42	first strand
Strand 2	B	46	51	anti-parallel
Strand 3	B	56	61	anti-parallel
Strand 4	B	74	80	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	94	first strand
Strand 2	B	98	103	anti-parallel
Strand 3	B	108	112	anti-parallel
Strand 4	B	127	133	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	147	first strand
Strand 2	B	151	156	anti-parallel
Strand 3	B	161	166	anti-parallel
Strand 4	B	179	185	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	197	first strand
Strand 2	B	201	206	anti-parallel
Strand 3	B	211	215	anti-parallel
Strand 4	B	236	237	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	250	first strand
Strand 2	B	254	259	anti-parallel
Strand 3	B	263	268	anti-parallel
Strand 4	B	282	288	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	302	first strand
Strand 2	B	306	311	anti-parallel
Strand 3	B	316	320	anti-parallel
Strand 4	B	337	342	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	13	18	anti-parallel
Strand 3	C	360	367	anti-parallel
Strand 4	C	349	356	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	42	first strand
Strand 2	C	46	51	anti-parallel
Strand 3	C	56	61	anti-parallel
Strand 4	C	74	80	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	94	first strand
Strand 2	C	98	103	anti-parallel
Strand 3	C	108	112	anti-parallel
Strand 4	C	127	132	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	147	first strand
Strand 2	C	151	156	anti-parallel
Strand 3	C	161	166	anti-parallel
Strand 4	C	179	185	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	197	first strand
Strand 2	C	201	206	anti-parallel
Strand 3	C	211	215	anti-parallel
Strand 4	C	236	237	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	250	first strand
Strand 2	C	254	259	anti-parallel
Strand 3	C	263	268	anti-parallel
Strand 4	C	282	288	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	302	first strand
Strand 2	C	306	311	anti-parallel
Strand 3	C	316	320	anti-parallel
Strand 4	C	337	342	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	D	13	18	anti-parallel
Strand 3	D	360	367	anti-parallel
Strand 4	D	349	356	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	42	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	56	61	anti-parallel
Strand 4	D	74	80	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	94	first strand
Strand 2	D	98	103	anti-parallel
Strand 3	D	108	112	anti-parallel
Strand 4	D	127	132	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	147	first strand
Strand 2	D	151	156	anti-parallel
Strand 3	D	161	166	anti-parallel
Strand 4	D	179	185	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	197	first strand
Strand 2	D	201	206	anti-parallel
Strand 3	D	211	215	anti-parallel
Strand 4	D	236	237	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	250	first strand
Strand 2	D	254	259	anti-parallel
Strand 3	D	263	268	anti-parallel
Strand 4	D	282	288	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	302	first strand
Strand 2	D	306	311	anti-parallel
Strand 3	D	316	320	anti-parallel
Strand 4	D	337	342	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JHN

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JHN