Analysis of interatomic Contacts of Structural Units in PDB entry:
4JHP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JHP entry

There are 2 chains in PDB entry 4JHP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 4VAL 150
C
 LEU 7HIS 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4JHP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
4 14Right-handed alpha
Helix 2
2
B
52 56Right-handed 310
Helix 3
3
B
119 124Right-handed alpha
Helix 4
4
C
82 85Right-handed 310
Helix 5
5
C
225 232Right-handed 310
Helix 6
6
C
290 293Right-handed 310
Helix 7
7
C
322 326Right-handed 310
Helix 8
8
C
344 347Right-handed 310
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There are 9 sheets in PDB entry 4JHP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
15 24anti-parallel
Strand 3
B
58 67anti-parallel
Strand 4
B
101 110anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 50first strand
Strand 2
B
138 150parallel
Strand 3
B
127 135anti-parallel
Strand 4
B
71 82anti-parallel
Strand 5
B
85 97anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 30first strand
Strand 2
C
13 18anti-parallel
Strand 3
C
360 367anti-parallel
Strand 4
C
349 356anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 42first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
56 60anti-parallel
Strand 4
C
79 80anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 94first strand
Strand 2
C
98 103anti-parallel
Strand 3
C
108 112anti-parallel
Strand 4
C
127 132anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 147first strand
Strand 2
C
151 156anti-parallel
Strand 3
C
161 166anti-parallel
Strand 4
C
179 186anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 197first strand
Strand 2
C
201 206anti-parallel
Strand 3
C
211 215anti-parallel
Strand 4
C
236 237anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
245 250first strand
Strand 2
C
254 259anti-parallel
Strand 3
C
263 268anti-parallel
Strand 4
C
282 288anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
297 302first strand
Strand 2
C
306 311anti-parallel
Strand 3
C
316 320anti-parallel
Strand 4
C
337 342anti-parallel
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