Analysis of interatomic Contacts of Structural Units in PDB entry:
4JNG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JNG entry

There are 5 chains in PDB entry 4JNG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 U 1 U 42
A
 GLN 4PHE 229
B
 ASN 14GLN 228
C
 PHE 5PHE 229
D
 SER 2GLN 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 4JNG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 32Right-handed alpha
Helix 2
2
A
33 35Right-handed 310
Helix 3
3
A
36 46Right-handed alpha
Helix 4
4
A
46 57Right-handed alpha
Helix 5
5
A
78 82Right-handed 310
Helix 6
6
A
92 111Right-handed alpha
Helix 7
7
A
111 122Right-handed alpha
Helix 8
8
A
127 131Right-handed 310
Helix 9
9
A
133 136Right-handed 310
Helix 10
10
A
137 143Right-handed alpha
Helix 11
11
A
147 152Right-handed 310
Helix 12
12
A
157 169Right-handed alpha
Helix 13
13
A
176 182Right-handed alpha
Helix 14
14
A
189 197Right-handed alpha
Helix 15
15
A
197 210Right-handed alpha
Helix 16
16
A
221 226Right-handed alpha
Helix 17
17
B
19 32Right-handed alpha
Helix 18
18
B
33 35Right-handed 310
Helix 19
19
B
36 57Right-handed alpha
Helix 20
20
B
78 82Right-handed 310
Helix 21
21
B
92 111Right-handed alpha
Helix 22
22
B
111 122Right-handed alpha
Helix 23
23
B
133 136Right-handed 310
Helix 24
24
B
137 143Right-handed alpha
Helix 25
25
B
147 152Right-handed 310
Helix 26
26
B
157 169Right-handed alpha
Helix 27
27
B
175 183Right-handed 310
Helix 28
28
B
189 197Right-handed alpha
Helix 29
29
B
197 209Right-handed alpha
Helix 30
30
C
19 31Right-handed alpha
Helix 31
31
C
36 44Right-handed alpha
Helix 32
32
C
46 54Right-handed alpha
Helix 33
33
C
78 84Right-handed 310
Helix 34
34
C
92 106Right-handed alpha
Helix 35
35
C
113 122Right-handed alpha
Helix 36
36
C
124 129Right-handed alpha
Helix 37
37
C
133 136Right-handed 310
Helix 38
38
C
137 143Right-handed alpha
Helix 39
39
C
147 152Right-handed 310
Helix 40
40
C
157 169Right-handed alpha
Helix 41
41
C
174 178Right-handed 310
Helix 42
42
C
179 183Right-handed 310
Helix 43
43
C
189 197Right-handed alpha
Helix 44
44
C
199 210Right-handed alpha
Helix 45
45
C
221 226Right-handed alpha
Helix 46
46
D
19 32Right-handed alpha
Helix 47
47
D
33 35Right-handed 310
Helix 48
48
D
36 47Right-handed alpha
Helix 49
49
D
48 57Right-handed alpha
Helix 50
50
D
93 110Right-handed alpha
Helix 51
51
D
111 122Right-handed alpha
Helix 52
52
D
124 129Right-handed alpha
Helix 53
53
D
133 136Right-handed 310
Helix 54
54
D
137 143Right-handed alpha
Helix 55
55
D
147 152Right-handed 310
Helix 56
56
D
157 170Right-handed alpha
Helix 57
57
D
173 178Right-handed 310
Helix 58
58
D
179 183Right-handed 310
Helix 59
59
D
189 197Right-handed alpha
Helix 60
60
D
197 209Right-handed alpha
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There are 4 sheets in PDB entry 4JNG. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
B
61 66parallel
Strand 3
B
69 74anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
61 66anti-parallel
Strand 3
D
6 7parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 66first strand
Strand 2
C
69 74anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 66first strand
Strand 2
D
69 72anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il