Analysis of interatomic Contacts of Structural Units in PDB entry:
4JNK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JNK entry

There are 4 chains in PDB entry 4JNK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 331
B
 ALA 1PHE 331
C
 ALA 1PHE 331
D
 ALA 1ILE 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 4JNK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 7Right-handed alpha
Helix 2
2
A
28 41Right-handed alpha
Helix 3
3
A
53 67Right-handed alpha
Helix 4
4
A
68 71Right-handed 310
Helix 5
5
A
81 86Right-handed 310
Helix 6
6
A
105 127Right-handed alpha
Helix 7
7
A
138 151Right-handed alpha
Helix 8
8
A
153 155Right-handed 310
Helix 9
9
A
162 178Right-handed alpha
Helix 10
10
A
180 182Right-handed 310
Helix 11
11
A
192 196Right-handed 310
Helix 12
12
A
200 202Right-handed 310
Helix 13
13
A
210 214Right-handed alpha
Helix 14
14
A
226 245Right-handed alpha
Helix 15
15
A
248 264Right-handed alpha
Helix 16
16
A
308 327Right-handed alpha
Helix 17
17
B
2 7Right-handed alpha
Helix 18
18
B
28 41Right-handed alpha
Helix 19
19
B
53 67Right-handed alpha
Helix 20
20
B
68 71Right-handed 310
Helix 21
21
B
81 86Right-handed 310
Helix 22
22
B
104 107Right-handed 310
Helix 23
23
B
108 127Right-handed alpha
Helix 24
24
B
138 151Right-handed alpha
Helix 25
25
B
153 155Right-handed 310
Helix 26
26
B
162 178Right-handed alpha
Helix 27
27
B
180 182Right-handed 310
Helix 28
28
B
200 202Right-handed 310
Helix 29
29
B
210 214Right-handed alpha
Helix 30
30
B
226 245Right-handed alpha
Helix 31
31
B
248 264Right-handed alpha
Helix 32
32
B
308 327Right-handed alpha
Helix 33
33
C
2 7Right-handed alpha
Helix 34
34
C
28 41Right-handed alpha
Helix 35
35
C
53 67Right-handed alpha
Helix 36
36
C
68 71Right-handed 310
Helix 37
37
C
81 86Right-handed 310
Helix 38
38
C
104 127Right-handed alpha
Helix 39
39
C
138 151Right-handed alpha
Helix 40
40
C
153 155Right-handed 310
Helix 41
41
C
162 178Right-handed alpha
Helix 42
42
C
180 182Right-handed 310
Helix 43
43
C
200 202Right-handed 310
Helix 44
44
C
210 214Right-handed alpha
Helix 45
45
C
226 245Right-handed alpha
Helix 46
46
C
248 265Right-handed alpha
Helix 47
47
C
308 327Right-handed alpha
Helix 48
48
D
2 7Right-handed alpha
Helix 49
49
D
28 41Right-handed alpha
Helix 50
50
D
53 66Right-handed alpha
Helix 51
51
D
67 71Right-handed 310
Helix 52
52
D
81 86Right-handed 310
Helix 53
53
D
104 127Right-handed alpha
Helix 54
54
D
138 151Right-handed alpha
Helix 55
55
D
153 155Right-handed 310
Helix 56
56
D
162 178Right-handed alpha
Helix 57
57
D
180 182Right-handed 310
Helix 58
58
D
200 202Right-handed 310
Helix 59
59
D
210 214Right-handed alpha
Helix 60
60
D
226 245Right-handed alpha
Helix 61
61
D
248 264Right-handed alpha
Helix 62
62
D
308 327Right-handed alpha
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There are 16 sheets in PDB entry 4JNK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
D
298 303anti-parallel
Strand 3
D
287 295anti-parallel
Strand 4
D
268 275anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
46 50parallel
Strand 3
A
21 25parallel
Strand 4
A
90 93parallel
Strand 5
A
131 134parallel
Strand 6
A
157 159parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
204 205anti-parallel
Strand 3
A
208 209anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
197 198anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 275first strand
Strand 2
A
287 295anti-parallel
Strand 3
A
298 303anti-parallel
Strand 4
D
8 10anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
C
298 303anti-parallel
Strand 3
C
287 295anti-parallel
Strand 4
C
268 275anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 78first strand
Strand 2
B
46 50parallel
Strand 3
B
21 25parallel
Strand 4
B
90 93parallel
Strand 5
B
131 134parallel
Strand 6
B
157 159parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 185first strand
Strand 2
B
204 205anti-parallel
Strand 3
B
208 209anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
197 198anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 275first strand
Strand 2
B
287 295anti-parallel
Strand 3
B
298 303anti-parallel
Strand 4
C
8 10anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 78first strand
Strand 2
C
46 50parallel
Strand 3
C
21 25parallel
Strand 4
C
90 93parallel
Strand 5
C
131 134parallel
Strand 6
C
157 159parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
184 185first strand
Strand 2
C
204 205anti-parallel
Strand 3
C
208 209anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 189first strand
Strand 2
C
197 198anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 78first strand
Strand 2
D
46 50parallel
Strand 3
D
21 25parallel
Strand 4
D
90 93parallel
Strand 5
D
131 134parallel
Strand 6
D
157 159parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
184 185first strand
Strand 2
D
204 205anti-parallel
Strand 3
D
208 209anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
188 189first strand
Strand 2
D
197 198anti-parallel
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