Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 4JOF entry
There are 4 chains in PDB entry 4JOF
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
GLY 284 | VAL 370 |
B
|
GLY 284 | VAL 370 |
C
|
ARG 4 | ILE 10 |
D
|
LEU 5 | ILE 10 |
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There are 6
helices in PDB entry 4JOF. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 307 |
310 | Right-handed 310 |
Helix 2 |
2 | A
| 322 |
328 | Right-handed alpha |
Helix 3 |
3 | A
| 348 |
359 | Right-handed alpha |
Helix 4 |
4 | B
| 307 |
310 | Right-handed 310 |
Helix 5 |
5 | B
| 322 |
328 | Right-handed alpha |
Helix 6 |
6 | B
| 348 |
359 | Right-handed alpha |
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There are
4 sheets in PDB entry 4JOF. Click on sheet of
interest to get list of strands forming it:
A,
B,
C,
D,
There are 4
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 287 |
292 | first strand |
Strand 2 |
A
| 362 |
369 | anti-parallel |
Strand 3 |
A
| 334 |
339 | anti-parallel |
Strand 4 |
A
| 342 |
343 | anti-parallel |
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There are 3
strands in B sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 311 |
318 | first strand |
Strand 2 |
A
| 301 |
306 | anti-parallel |
Strand 3 |
C
| 7 |
10 | anti-parallel |
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There are 4
strands in C sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
B
| 287 |
293 | first strand |
Strand 2 |
B
| 361 |
368 | anti-parallel |
Strand 3 |
B
| 335 |
339 | anti-parallel |
Strand 4 |
B
| 342 |
343 | anti-parallel |
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There are 3
strands in D sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
B
| 311 |
318 | first strand |
Strand 2 |
B
| 301 |
306 | anti-parallel |
Strand 3 |
D
| 8 |
10 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il