Analysis of interatomic Contacts of Structural Units in PDB entry:
4JUO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JUO entry

There are 4 chains in PDB entry 4JUO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 3ASP 484
C
ALA 24THR 640
E
DC 9 DT 15
F
DA 1 DG 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4JUO. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
9 28Right-handed alpha
Helix 2
2
A
38 51Right-handed alpha
Helix 3
3
A
62 73Right-handed alpha
Helix 4
4
A
77 88Right-handed alpha
Helix 5
5
A
124 132Right-handed alpha
Helix 6
6
A
133 137Right-handed 310
Helix 7
7
A
160 166Right-handed alpha
Helix 8
8
A
182 196Right-handed alpha
Helix 9
9
A
200 205Right-handed alpha
Helix 10
10
A
221 232Right-handed alpha
Helix 11
11
A
264 279Right-handed alpha
Helix 12
12
A
307 319Right-handed alpha
Helix 13
13
A
343 384Right-handed alpha
Helix 14
14
A
384 395Right-handed alpha
Helix 15
15
A
397 410Right-handed alpha
Helix 16
16
A
412 421Right-handed alpha
Helix 17
17
A
423 429Right-handed 310
Helix 18
18
A
432 455Right-handed alpha
Helix 19
19
A
456 474Right-handed alpha
Helix 20
20
C
28 33Right-handed alpha
Helix 21
21
C
40 58Right-handed alpha
Helix 22
22
C
95 101Right-handed alpha
Helix 23
23
C
125 130Right-handed alpha
Helix 24
24
C
189 202Right-handed alpha
Helix 25
25
C
229 236Right-handed alpha
Helix 26
26
C
284 304Right-handed alpha
Helix 27
27
C
317 322Right-handed 310
Helix 28
28
C
351 371Right-handed alpha
Helix 29
29
C
372 394Right-handed alpha
Helix 30
30
C
434 445Right-handed alpha
Helix 31
31
C
466 472Right-handed alpha
Helix 32
32
C
473 484Right-handed alpha
Helix 33
33
C
508 532Right-handed alpha
Helix 34
34
C
562 568Right-handed alpha
Helix 35
35
C
587 596Right-handed alpha
Helix 36
36
C
610 622Right-handed alpha
Helix 37
37
C
625 637Right-handed alpha
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There are 11 sheets in PDB entry 4JUO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 8first strand
Strand 2
C
603 607parallel
Strand 3
C
535 537anti-parallel
Strand 4
C
500 504parallel
Strand 5
C
428 433parallel
Strand 6
C
450 455parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
60 61first strand
Strand 2
A
120 123anti-parallel
Strand 3
A
99 102anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
141 143first strand
Strand 2
A
150 152anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
167 170first strand
Strand 2
A
175 178anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
322 328first strand
Strand 2
A
233 239anti-parallel
Strand 3
A
218 220anti-parallel
Strand 4
A
481 483parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
241 246first strand
Strand 2
A
252 258anti-parallel
Strand 3
A
298 302anti-parallel
Strand 4
A
284 289anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
330 333first strand
Strand 2
A
336 339anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
154 155first strand
Strand 2
C
143 150anti-parallel
Strand 3
C
160 164anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
154 155first strand
Strand 2
C
143 150anti-parallel
Strand 3
C
131 140anti-parallel
Strand 4
C
171 178anti-parallel
Strand 5
C
74 78anti-parallel
Strand 6
C
63 68anti-parallel
Strand 7
C
208 213parallel
Strand 8
C
218 222anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
246 252first strand
Strand 2
C
255 263anti-parallel
Strand 3
C
324 331anti-parallel
Strand 4
C
270 275parallel
Strand 5
C
278 279anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
543 544first strand
Strand 2
C
578 579anti-parallel
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