Analysis of interatomic Contacts of Structural Units in PDB entry:
4K88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4K88 entry

There is 1 chain in PDB entry 4K88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 16TYR 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4K88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 35Right-handed alpha
Helix 2
2
A
50 71Right-handed alpha
Helix 3
3
A
84 88Right-handed alpha
Helix 4
4
A
94 101Right-handed 310
Helix 5
5
A
122 134Right-handed alpha
Helix 6
6
A
136 140Right-handed 310
Helix 7
7
A
178 200Right-handed alpha
Helix 8
8
A
230 233Right-handed 310
Helix 9
9
A
246 253Right-handed alpha
Helix 10
10
A
277 288Right-handed alpha
Helix 11
11
A
319 336Right-handed alpha
Helix 12
12
A
350 361Right-handed alpha
Helix 13
13
A
370 376Right-handed alpha
Helix 14
14
A
396 417Right-handed alpha
Helix 15
15
A
417 423Right-handed alpha
Helix 16
16
A
429 439Right-handed alpha
Helix 17
17
A
451 463Right-handed alpha
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There are 6 sheets in PDB entry 4K88. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
47 49anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
142 151parallel
Strand 3
A
166 176anti-parallel
Strand 4
A
269 276anti-parallel
Strand 5
A
235 245anti-parallel
Strand 6
A
221 228anti-parallel
Strand 7
A
206 209anti-parallel
Strand 8
A
481 482anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
110 118anti-parallel
Strand 3
A
103 107anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 257first strand
Strand 2
A
265 267anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
304 308parallel
Strand 3
A
365 369parallel
Strand 4
A
378 383anti-parallel
Strand 5
A
389 393anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 426first strand
Strand 2
A
442 447parallel
Strand 3
A
504 509anti-parallel
Strand 4
A
477 478anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il