Analysis of interatomic Contacts of Structural Units in PDB entry:
4KBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KBO entry

There is 1 chain in PDB entry 4KBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 54ALA 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 4KBO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
102 107Right-handed alpha
Helix 2
2
A
112 114Right-handed 310
Helix 3
3
A
119 123Right-handed 310
Helix 4
4
A
130 140Right-handed alpha
Helix 5
5
A
162 183Right-handed alpha
Helix 6
6
A
198 212Right-handed alpha
Helix 7
7
A
222 230Right-handed alpha
Helix 8
8
A
231 235Right-handed 310
Helix 9
9
A
274 295Right-handed alpha
Helix 10
10
A
301 319Right-handed alpha
Helix 11
11
A
348 355Right-handed alpha
Helix 12
12
A
355 361Right-handed alpha
Helix 13
13
A
362 373Right-handed alpha
Helix 14
14
A
387 391Right-handed 310
Helix 15
15
A
392 404Right-handed alpha
Helix 16
16
A
415 429Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4KBO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
64 71anti-parallel
Strand 3
A
87 88anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
64 71anti-parallel
Strand 3
A
56 59anti-parallel
Strand 4
A
188 193parallel
Strand 5
A
215 221parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
91 93anti-parallel
Strand 3
A
116 117anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 146first strand
Strand 2
A
152 156anti-parallel
Strand 3
A
159 161anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 270first strand
Strand 2
A
250 258anti-parallel
Strand 3
A
237 245anti-parallel
Strand 4
A
382 386parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 333first strand
Strand 2
A
340 347anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il