Analysis of interatomic Contacts of Structural Units in PDB entry:
4KM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KM5 entry

There is 1 chain in PDB entry 4KM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 161PHE 522
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4KM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
162 176Right-handed alpha
Helix 2
2
A
177 199Right-handed alpha
Helix 3
3
A
260 265Right-handed 310
Helix 4
4
A
272 290Right-handed alpha
Helix 5
5
A
301 305Right-handed 310
Helix 6
6
A
332 335Right-handed 310
Helix 7
7
A
341 344Right-handed alpha
Helix 8
8
A
346 354Right-handed alpha
Helix 9
9
A
380 389Right-handed alpha
Helix 10
10
A
405 424Right-handed alpha
Helix 11
11
A
434 448Right-handed alpha
Helix 12
12
A
452 455Right-handed 310
Helix 13
13
A
460 477Right-handed alpha
Helix 14
14
A
497 514Right-handed alpha
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There are 2 sheets in PDB entry 4KM5. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
316 326parallel
Strand 4
A
357 361anti-parallel
Strand 5
A
375 378anti-parallel
Strand 6
A
248 253anti-parallel
Strand 7
A
237 241anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
316 326parallel
Strand 4
A
308 312anti-parallel
Strand 5
A
296 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il