Analysis of interatomic Contacts of Structural Units in PDB entry:
4L0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4L0D entry

There are 2 chains in PDB entry 4L0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 41GLN 550
B
 PRO 41ASP 549
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 4L0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 63Right-handed 310
Helix 2
2
A
79 84Right-handed 310
Helix 3
3
A
93 99Right-handed alpha
Helix 4
4
A
111 113Right-handed 310
Helix 5
5
A
118 133Right-handed alpha
Helix 6
6
A
148 162Right-handed alpha
Helix 7
7
A
174 184Right-handed alpha
Helix 8
8
A
202 214Right-handed alpha
Helix 9
9
A
226 235Right-handed alpha
Helix 10
10
A
235 244Right-handed alpha
Helix 11
11
A
258 272Right-handed alpha
Helix 12
12
A
290 295Right-handed 310
Helix 13
13
A
316 320Right-handed 310
Helix 14
14
A
327 343Right-handed alpha
Helix 15
15
A
347 361Right-handed alpha
Helix 16
16
A
362 364Right-handed 310
Helix 17
17
A
377 381Right-handed 310
Helix 18
18
A
387 394Right-handed alpha
Helix 19
19
A
400 401Right-handed 310
Helix 20
20
A
403 405Right-handed 310
Helix 21
21
A
407 411Right-handed 310
Helix 22
22
A
413 418Right-handed 310
Helix 23
23
A
430 442Right-handed alpha
Helix 24
24
A
461 470Right-handed alpha
Helix 25
25
A
495 506Right-handed alpha
Helix 26
26
A
535 548Right-handed alpha
Helix 27
27
B
59 63Right-handed 310
Helix 28
28
B
79 84Right-handed 310
Helix 29
29
B
93 99Right-handed alpha
Helix 30
30
B
111 113Right-handed 310
Helix 31
31
B
118 133Right-handed alpha
Helix 32
32
B
148 162Right-handed alpha
Helix 33
33
B
174 185Right-handed alpha
Helix 34
34
B
202 214Right-handed alpha
Helix 35
35
B
226 235Right-handed alpha
Helix 36
36
B
235 245Right-handed alpha
Helix 37
37
B
258 272Right-handed alpha
Helix 38
38
B
290 295Right-handed 310
Helix 39
39
B
316 320Right-handed 310
Helix 40
40
B
327 343Right-handed alpha
Helix 41
41
B
347 361Right-handed alpha
Helix 42
42
B
362 364Right-handed 310
Helix 43
43
B
387 394Right-handed alpha
Helix 44
44
B
398 406Right-handed alpha
Helix 45
45
B
407 411Right-handed 310
Helix 46
46
B
413 418Right-handed 310
Helix 47
47
B
430 442Right-handed alpha
Helix 48
48
B
461 470Right-handed alpha
Helix 49
49
B
478 482Right-handed 310
Helix 50
50
B
495 506Right-handed alpha
Helix 51
51
B
535 549Right-handed alpha
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There are 8 sheets in PDB entry 4L0D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
B
89 91parallel
Strand 3
B
104 109anti-parallel
Strand 4
B
369 374parallel
Strand 5
B
250 254parallel
Strand 6
B
276 282parallel
Strand 7
B
322 326parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
276 282parallel
Strand 3
A
250 254parallel
Strand 4
A
369 374parallel
Strand 5
A
104 109parallel
Strand 6
A
89 91anti-parallel
Strand 7
B
76 77parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 191first strand
Strand 2
A
164 170parallel
Strand 3
A
141 145parallel
Strand 4
A
217 218parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 448first strand
Strand 2
A
457 460anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 490first strand
Strand 2
A
509 512parallel
Strand 3
A
530 534anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 191first strand
Strand 2
B
164 170parallel
Strand 3
B
141 145parallel
Strand 4
B
217 218parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 448first strand
Strand 2
B
457 460anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 490first strand
Strand 2
B
509 512parallel
Strand 3
B
530 534anti-parallel
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