Analysis of interatomic Contacts of Structural Units in PDB entry:
4L28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4L28 entry

There are 4 chains in PDB entry 4L28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 42ARG 548
B
LEU 42GLN 550
C
TRP 43ASP 549
D
TRP 43ASP 549
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are102 helices in PDB entry 4L28. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
59 63Right-handed 310
Helix 2
2
A
79 83Right-handed 310
Helix 3
3
A
94 99Right-handed alpha
Helix 4
4
A
111 113Right-handed 310
Helix 5
5
A
118 134Right-handed alpha
Helix 6
6
A
148 162Right-handed alpha
Helix 7
7
A
174 184Right-handed alpha
Helix 8
8
A
202 214Right-handed alpha
Helix 9
9
A
226 235Right-handed alpha
Helix 10
10
A
235 244Right-handed alpha
Helix 11
11
A
258 272Right-handed alpha
Helix 12
12
A
290 295Right-handed 310
Helix 13
13
A
316 320Right-handed 310
Helix 14
14
A
327 343Right-handed alpha
Helix 15
15
A
347 361Right-handed alpha
Helix 16
16
A
362 364Right-handed 310
Helix 17
17
A
377 382Right-handed 310
Helix 18
18
A
387 394Right-handed alpha
Helix 19
19
A
400 401Right-handed 310
Helix 20
20
A
403 406Right-handed 310
Helix 21
21
A
407 412Right-handed 310
Helix 22
22
A
413 418Right-handed 310
Helix 23
23
A
430 442Right-handed alpha
Helix 24
24
A
461 470Right-handed alpha
Helix 25
25
A
478 482Right-handed 310
Helix 26
26
A
495 503Right-handed alpha
Helix 27
27
A
535 548Right-handed alpha
Helix 28
28
B
59 63Right-handed 310
Helix 29
29
B
79 83Right-handed 310
Helix 30
30
B
94 99Right-handed alpha
Helix 31
31
B
111 113Right-handed 310
Helix 32
32
B
118 133Right-handed alpha
Helix 33
33
B
148 162Right-handed alpha
Helix 34
34
B
174 184Right-handed alpha
Helix 35
35
B
202 214Right-handed alpha
Helix 36
36
B
226 235Right-handed alpha
Helix 37
37
B
235 244Right-handed alpha
Helix 38
38
B
258 272Right-handed alpha
Helix 39
39
B
290 295Right-handed 310
Helix 40
40
B
316 320Right-handed 310
Helix 41
41
B
327 343Right-handed alpha
Helix 42
42
B
347 361Right-handed alpha
Helix 43
43
B
362 364Right-handed 310
Helix 44
44
B
377 382Right-handed 310
Helix 45
45
B
387 394Right-handed alpha
Helix 46
46
B
407 412Right-handed 310
Helix 47
47
B
413 418Right-handed 310
Helix 48
48
B
430 442Right-handed alpha
Helix 49
49
B
461 470Right-handed alpha
Helix 50
50
B
478 482Right-handed 310
Helix 51
51
B
495 503Right-handed alpha
Helix 52
52
B
535 548Right-handed alpha
Helix 53
53
C
59 63Right-handed 310
Helix 54
54
C
79 83Right-handed 310
Helix 55
55
C
94 99Right-handed alpha
Helix 56
56
C
111 113Right-handed 310
Helix 57
57
C
118 134Right-handed alpha
Helix 58
58
C
148 162Right-handed alpha
Helix 59
59
C
174 184Right-handed alpha
Helix 60
60
C
202 214Right-handed alpha
Helix 61
61
C
226 235Right-handed alpha
Helix 62
62
C
235 244Right-handed alpha
Helix 63
63
C
258 272Right-handed alpha
Helix 64
64
C
290 295Right-handed 310
Helix 65
65
C
316 320Right-handed 310
Helix 66
66
C
327 343Right-handed alpha
Helix 67
67
C
347 361Right-handed alpha
Helix 68
68
C
362 364Right-handed 310
Helix 69
69
C
377 382Right-handed 310
Helix 70
70
C
387 394Right-handed alpha
Helix 71
71
C
407 412Right-handed 310
Helix 72
72
C
413 418Right-handed 310
Helix 73
73
C
430 442Right-handed alpha
Helix 74
74
C
461 470Right-handed alpha
Helix 75
75
C
478 482Right-handed 310
Helix 76
76
C
495 503Right-handed alpha
Helix 77
77
C
535 548Right-handed alpha
Helix 78
78
D
59 63Right-handed 310
Helix 79
79
D
79 83Right-handed 310
Helix 80
80
D
94 99Right-handed alpha
Helix 81
81
D
111 113Right-handed 310
Helix 82
82
D
118 134Right-handed alpha
Helix 83
83
D
148 162Right-handed alpha
Helix 84
84
D
174 184Right-handed alpha
Helix 85
85
D
202 214Right-handed alpha
Helix 86
86
D
226 235Right-handed alpha
Helix 87
87
D
235 244Right-handed alpha
Helix 88
88
D
258 272Right-handed alpha
Helix 89
89
D
290 295Right-handed 310
Helix 90
90
D
316 320Right-handed 310
Helix 91
91
D
327 343Right-handed alpha
Helix 92
92
D
347 361Right-handed alpha
Helix 93
93
D
362 364Right-handed 310
Helix 94
94
D
377 382Right-handed 310
Helix 95
95
D
387 394Right-handed alpha
Helix 96
96
D
407 412Right-handed 310
Helix 97
97
D
413 418Right-handed 310
Helix 98
98
D
430 442Right-handed alpha
Helix 99
99
D
461 470Right-handed alpha
Helix 100
100
D
478 482Right-handed 310
Helix 101
101
D
495 503Right-handed alpha
Helix 102
102
D
535 548Right-handed alpha
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There are 16 sheets in PDB entry 4L28. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
89 91first strand
Strand 2
A
104 109anti-parallel
Strand 3
A
369 374parallel
Strand 4
A
250 254parallel
Strand 5
A
276 282parallel
Strand 6
A
322 326parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
187 191first strand
Strand 2
A
164 170parallel
Strand 3
A
141 145parallel
Strand 4
A
217 219parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
445 449first strand
Strand 2
A
455 460anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
488 490first strand
Strand 2
A
509 513parallel
Strand 3
A
529 534anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
322 326first strand
Strand 2
B
276 282parallel
Strand 3
B
250 254parallel
Strand 4
B
369 374parallel
Strand 5
B
104 109parallel
Strand 6
B
89 91anti-parallel
Strand 7
D
76 77parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
187 191first strand
Strand 2
B
164 170parallel
Strand 3
B
141 145parallel
Strand 4
B
217 219parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
445 449first strand
Strand 2
B
455 460anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
488 490first strand
Strand 2
B
509 512parallel
Strand 3
B
530 534anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
89 91first strand
Strand 2
C
104 109anti-parallel
Strand 3
C
369 374parallel
Strand 4
C
250 254parallel
Strand 5
C
276 282parallel
Strand 6
C
322 326parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
187 191first strand
Strand 2
C
164 170parallel
Strand 3
C
141 145parallel
Strand 4
C
217 219parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
445 449first strand
Strand 2
C
455 460anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
488 490first strand
Strand 2
C
509 512parallel
Strand 3
C
530 534anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
89 91first strand
Strand 2
D
104 109anti-parallel
Strand 3
D
369 374parallel
Strand 4
D
250 254parallel
Strand 5
D
276 282parallel
Strand 6
D
322 326parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
187 191first strand
Strand 2
D
164 170parallel
Strand 3
D
141 145parallel
Strand 4
D
217 219parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
445 449first strand
Strand 2
D
455 460anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
488 490first strand
Strand 2
D
509 513parallel
Strand 3
D
529 534anti-parallel
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