Analysis of interatomic Contacts of Structural Units in PDB entry:
4LDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LDY entry

There are 2 chains in PDB entry 4LDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 16ASN 356
B
 SER 16ASN 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4LDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 29Right-handed alpha
Helix 2
2
A
44 54Right-handed alpha
Helix 3
3
A
142 150Right-handed alpha
Helix 4
4
A
192 201Right-handed alpha
Helix 5
5
A
242 257Right-handed alpha
Helix 6
6
A
277 286Right-handed alpha
Helix 7
7
A
348 352Right-handed 310
Helix 8
8
B
17 29Right-handed alpha
Helix 9
9
B
44 56Right-handed alpha
Helix 10
10
B
129 134Right-handed 310
Helix 11
11
B
142 150Right-handed alpha
Helix 12
12
B
192 201Right-handed alpha
Helix 13
13
B
238 257Right-handed alpha
Helix 14
14
B
277 286Right-handed alpha
Helix 15
15
B
348 352Right-handed 310
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There are 8 sheets in PDB entry 4LDY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 264first strand
Strand 2
A
91 99anti-parallel
Strand 3
A
73 84anti-parallel
Strand 4
A
40 43anti-parallel
Strand 5
A
274 276anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
207 212anti-parallel
Strand 3
A
218 223anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
186 189anti-parallel
Strand 3
A
173 181anti-parallel
Strand 4
A
161 167anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 347first strand
Strand 2
A
331 335anti-parallel
Strand 3
A
306 314anti-parallel
Strand 4
A
293 298anti-parallel
Strand 5
A
353 354anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 264first strand
Strand 2
B
91 99anti-parallel
Strand 3
B
73 84anti-parallel
Strand 4
B
40 43anti-parallel
Strand 5
B
274 276anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 127first strand
Strand 2
B
207 212anti-parallel
Strand 3
B
218 223anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 141first strand
Strand 2
B
186 189anti-parallel
Strand 3
B
173 181anti-parallel
Strand 4
B
161 167anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 347first strand
Strand 2
B
331 335anti-parallel
Strand 3
B
305 315anti-parallel
Strand 4
B
293 299anti-parallel
Strand 5
B
353 354anti-parallel
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