Analysis of interatomic Contacts of Structural Units in PDB entry:
4LF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LF5 entry

There is 1 chain in PDB entry 4LF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
U 5 U 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 83 helices in PDB entry 4LF5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
B
25 30Right-handed 310
Helix 2
2
B
43 65Right-handed alpha
Helix 3
3
B
80 87Right-handed alpha
Helix 4
4
B
104 120Right-handed alpha
Helix 5
5
B
124 128Right-handed 310
Helix 6
6
B
131 150Right-handed alpha
Helix 7
7
B
151 155Right-handed 310
Helix 8
8
B
170 180Right-handed alpha
Helix 9
9
B
193 197Right-handed 310
Helix 10
10
B
207 227Right-handed alpha
Helix 11
11
B
235 239Right-handed 310
Helix 12
12
C
6 11Right-handed alpha
Helix 13
13
C
28 45Right-handed alpha
Helix 14
14
C
46 51Right-handed 310
Helix 15
15
C
72 78Right-handed alpha
Helix 16
16
C
81 95Right-handed alpha
Helix 17
17
C
112 126Right-handed alpha
Helix 18
18
C
129 143Right-handed alpha
Helix 19
19
D
9 15Right-handed alpha
Helix 20
20
D
52 69Right-handed alpha
Helix 21
21
D
71 85Right-handed alpha
Helix 22
22
D
88 99Right-handed alpha
Helix 23
23
D
100 108Right-handed alpha
Helix 24
24
D
113 123Right-handed alpha
Helix 25
25
D
151 154Right-handed 310
Helix 26
26
D
155 164Right-handed alpha
Helix 27
27
D
199 209Right-handed alpha
Helix 28
28
E
50 65Right-handed alpha
Helix 29
29
E
103 113Right-handed alpha
Helix 30
30
E
127 141Right-handed alpha
Helix 31
31
E
144 153Right-handed alpha
Helix 32
32
F
15 33Right-handed alpha
Helix 33
33
F
68 81Right-handed alpha
Helix 34
34
G
20 31Right-handed alpha
Helix 35
35
G
35 49Right-handed alpha
Helix 36
36
G
57 70Right-handed alpha
Helix 37
37
G
94 110Right-handed alpha
Helix 38
38
G
115 130Right-handed alpha
Helix 39
39
G
132 145Right-handed alpha
Helix 40
40
G
148 155Right-handed 310
Helix 41
41
H
4 19Right-handed alpha
Helix 42
42
H
29 43Right-handed alpha
Helix 43
43
H
102 107Right-handed 310
Helix 44
44
H
121 128Right-handed alpha
Helix 45
45
I
42 51Right-handed 310
Helix 46
46
I
69 89Right-handed alpha
Helix 47
47
I
92 97Right-handed alpha
Helix 48
48
J
12 25Right-handed alpha
Helix 49
49
J
78 83Right-handed alpha
Helix 50
50
K
52 56Right-handed 310
Helix 51
51
K
57 76Right-handed alpha
Helix 52
52
K
91 100Right-handed alpha
Helix 53
53
L
6 13Right-handed alpha
Helix 54
54
L
116 121Right-handed alpha
Helix 55
55
M
14 20Right-handed alpha
Helix 56
56
M
26 38Right-handed alpha
Helix 57
57
M
49 62Right-handed alpha
Helix 58
58
M
66 84Right-handed alpha
Helix 59
59
M
86 94Right-handed alpha
Helix 60
60
M
107 112Right-handed alpha
Helix 61
61
N
4 8Right-handed 310
Helix 62
62
N
41 51Right-handed alpha
Helix 63
63
O
4 16Right-handed alpha
Helix 64
64
O
24 43Right-handed alpha
Helix 65
65
O
49 74Right-handed alpha
Helix 66
66
O
74 86Right-handed alpha
Helix 67
67
P
52 62Right-handed alpha
Helix 68
68
P
67 77Right-handed alpha
Helix 69
69
Q
82 94Right-handed alpha
Helix 70
70
Q
95 98Right-handed 310
Helix 71
71
R
36 41Right-handed alpha
Helix 72
72
R
42 44Right-handed 310
Helix 73
73
R
52 57Right-handed alpha
Helix 74
74
R
59 76Right-handed alpha
Helix 75
75
S
12 26Right-handed alpha
Helix 76
76
S
41 45Right-handed 310
Helix 77
77
S
63 67Right-handed 310
Helix 78
78
S
70 75Right-handed 310
Helix 79
79
T
10 12Right-handed 310
Helix 80
80
T
13 46Right-handed alpha
Helix 81
81
T
48 69Right-handed alpha
Helix 82
82
T
75 93Right-handed alpha
Helix 83
83
U
8 15Right-handed alpha
Back to top of page

There are 22 sheets in PDB entry 4LF5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
17 20first strand
Strand 2
B
39 42anti-parallel
Strand 3
B
32 36anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
92 93first strand
Strand 2
B
69 71parallel
Strand 3
B
162 164parallel
Strand 4
B
184 187parallel
Strand 5
B
199 201parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
54 56first strand
Strand 2
C
67 70anti-parallel
Strand 3
C
102 105parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
169 171first strand
Strand 2
C
148 153anti-parallel
Strand 3
C
194 203anti-parallel
Strand 4
C
182 191anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
131 132first strand
Strand 2
D
126 128anti-parallel
Strand 3
D
145 148anti-parallel
Strand 4
D
182 185anti-parallel
Strand 5
D
174 177anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
7 19first strand
Strand 2
E
24 35anti-parallel
Strand 3
E
40 48anti-parallel
Strand 4
E
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
80 84first strand
Strand 2
E
87 93anti-parallel
Strand 3
E
118 124anti-parallel
Strand 4
E
100 101parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
36 52first strand
Strand 2
F
55 67anti-parallel
Strand 3
F
2 10anti-parallel
Strand 4
F
85 92anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
98 99first strand
Strand 2
R
29 30anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
74 76first strand
Strand 2
G
87 89anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
23 27first strand
Strand 2
H
56 63anti-parallel
Strand 3
H
45 53anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
82 85first strand
Strand 2
H
132 138anti-parallel
Strand 3
H
109 114anti-parallel
Strand 4
H
117 120anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
4 6first strand
Strand 2
I
13 21anti-parallel
Strand 3
I
9 10anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
4 6first strand
Strand 2
I
13 21anti-parallel
Strand 3
I
59 66anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
43 47first strand
Strand 2
J
63 70anti-parallel
Strand 3
J
5 10anti-parallel
Strand 4
J
94 99anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
43 47first strand
Strand 2
J
63 70anti-parallel
Strand 3
N
56 58anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
39 44first strand
Strand 2
K
28 33anti-parallel
Strand 3
K
16 23anti-parallel
Strand 4
K
79 85parallel
Strand 5
K
104 110parallel
Strand 6
R
85 86anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
32 40first strand
Strand 2
L
55 60anti-parallel
Strand 3
L
65 69anti-parallel
Strand 4
L
98 100parallel
Strand 5
L
82 86anti-parallel
Strand 6
L
32 40anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
33 34first strand
Strand 2
N
39 40anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
49 51first strand
Strand 2
P
34 39anti-parallel
Strand 3
P
17 23anti-parallel
Strand 4
P
2 8anti-parallel
Strand 5
P
65 66parallel
Back to list of sheets
Back to top of page

There are 6 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
5 12first strand
Strand 2
Q
18 28anti-parallel
Strand 3
Q
35 45anti-parallel
Strand 4
Q
69 78parallel
Strand 5
Q
56 61anti-parallel
Strand 6
Q
5 12anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
31 33first strand
Strand 2
S
48 52parallel
Strand 3
S
57 61anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il