Analysis of interatomic Contacts of Structural Units in PDB entry:
4M04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M04 entry

There are 4 chains in PDB entry 4M04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TRP 137ALA 494
T
C 1 G 9
P
C 1 A 4
D
G 1 DG 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4M04. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
141 145Right-handed 310
Helix 2
2
A
153 170Right-handed alpha
Helix 3
3
A
172 188Right-handed alpha
Helix 4
4
A
195 200Right-handed 310
Helix 5
5
A
206 220Right-handed alpha
Helix 6
6
A
222 231Right-handed alpha
Helix 7
7
A
231 242Right-handed alpha
Helix 8
8
A
247 257Right-handed alpha
Helix 9
9
A
261 268Right-handed alpha
Helix 10
10
A
269 272Right-handed 310
Helix 11
11
A
273 282Right-handed alpha
Helix 12
12
A
282 287Right-handed alpha
Helix 13
13
A
292 310Right-handed alpha
Helix 14
14
A
318 323Right-handed alpha
Helix 15
15
A
345 357Right-handed alpha
Helix 16
16
A
423 425Right-handed 310
Helix 17
17
A
426 436Right-handed alpha
Helix 18
18
A
437 453Right-handed alpha
Helix 19
19
A
474 482Right-handed alpha
Helix 20
20
A
488 492Right-handed 310
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There are 3 sheets in PDB entry 4M04. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
290 291first strand
Strand 2
A
327 328anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
314 317first strand
Strand 2
A
331 336anti-parallel
Strand 3
A
411 421parallel
Strand 4
A
387 396anti-parallel
Strand 5
A
360 362anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
455 456first strand
Strand 2
A
461 463anti-parallel
Strand 3
A
468 469anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il