Analysis of interatomic Contacts of Structural Units in PDB entry:
4M7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M7D entry

There are 16 chains in PDB entry 4M7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ILE 67
B
 MET 1THR 92
C
 THR 3PRO 79
D
 VAL 11GLN 84
E
 PRO 4GLY 85
F
 ALA 26ALA 105
G
 MET 1LYS 88
H
 SER 2ILE 67
I
 MET 1MET 91
J
 GLU 2PRO 79
K
 VAL 11GLN 84
L
 PRO 4GLY 85
M
 ILE 27ALA 105
N
 MET 1GLN 82
O
 C 107 U 111
P
 G 108 U 111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 4M7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 9Right-handed 310
Helix 2
2
B
2 9Right-handed alpha
Helix 3
3
B
73 77Right-handed 310
Helix 4
4
B
78 89Right-handed alpha
Helix 5
5
D
12 19Right-handed alpha
Helix 6
6
E
7 15Right-handed alpha
Helix 7
7
F
29 34Right-handed 310
Helix 8
8
G
2 10Right-handed alpha
Helix 9
9
G
83 87Right-handed 310
Helix 10
10
I
2 9Right-handed alpha
Helix 11
11
I
73 77Right-handed 310
Helix 12
12
I
78 89Right-handed alpha
Helix 13
13
J
3 10Right-handed alpha
Helix 14
14
K
12 19Right-handed alpha
Helix 15
15
L
7 15Right-handed alpha
Helix 16
16
M
29 34Right-handed 310
Helix 17
17
N
4 9Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4M7D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 36 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
76 81first strand
Strand 2
A
48 56anti-parallel
Strand 3
A
36 43anti-parallel
Strand 4
A
22 30anti-parallel
Strand 5
A
12 17anti-parallel
Strand 6
A
61 66anti-parallel
Strand 7
B
59 62anti-parallel
Strand 8
B
38 44anti-parallel
Strand 9
B
23 32anti-parallel
Strand 10
B
14 19anti-parallel
Strand 11
B
67 72anti-parallel
Strand 12
C
55 68anti-parallel
Strand 13
C
39 52anti-parallel
Strand 14
C
24 33anti-parallel
Strand 15
C
15 20anti-parallel
Strand 16
C
73 77anti-parallel
Strand 17
D
71 73anti-parallel
Strand 18
D
47 56anti-parallel
Strand 19
D
32 41anti-parallel
Strand 20
D
23 28anti-parallel
Strand 21
D
78 83anti-parallel
Strand 22
E
70 73anti-parallel
Strand 23
E
43 51anti-parallel
Strand 24
E
29 37anti-parallel
Strand 25
E
19 24anti-parallel
Strand 26
E
78 83anti-parallel
Strand 27
F
92 94anti-parallel
Strand 28
F
61 69anti-parallel
Strand 29
F
47 55anti-parallel
Strand 30
F
37 42anti-parallel
Strand 31
F
99 104anti-parallel
Strand 32
G
64 71anti-parallel
Strand 33
G
38 46anti-parallel
Strand 34
G
24 32anti-parallel
Strand 35
G
14 19anti-parallel
Strand 36
G
76 81anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 56first strand
Strand 2
D
65 66anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 51first strand
Strand 2
E
63 66anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
61 69first strand
Strand 2
F
87 88anti-parallel
Back to list of sheets
Back to top of page

There are 38 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
87 88first strand
Strand 2
M
67 69anti-parallel
Strand 3
M
47 51anti-parallel
Strand 4
M
37 42anti-parallel
Strand 5
M
99 102anti-parallel
Strand 6
N
65 71anti-parallel
Strand 7
N
38 44anti-parallel
Strand 8
N
24 31anti-parallel
Strand 9
N
14 19anti-parallel
Strand 10
N
76 80anti-parallel
Strand 11
H
54 56anti-parallel
Strand 12
H
36 43anti-parallel
Strand 13
H
22 30anti-parallel
Strand 14
H
12 17anti-parallel
Strand 15
H
61 66anti-parallel
Strand 16
I
59 62anti-parallel
Strand 17
I
38 44anti-parallel
Strand 18
I
24 32anti-parallel
Strand 19
I
13 19anti-parallel
Strand 20
I
67 71anti-parallel
Strand 21
J
55 68anti-parallel
Strand 22
J
39 52anti-parallel
Strand 23
J
24 33anti-parallel
Strand 24
J
15 20anti-parallel
Strand 25
J
73 77anti-parallel
Strand 26
K
71 73anti-parallel
Strand 27
K
47 56anti-parallel
Strand 28
K
32 41anti-parallel
Strand 29
K
23 28anti-parallel
Strand 30
K
78 83anti-parallel
Strand 31
L
70 73anti-parallel
Strand 32
L
43 52anti-parallel
Strand 33
L
28 37anti-parallel
Strand 34
L
19 24anti-parallel
Strand 35
L
78 83anti-parallel
Strand 36
M
92 94anti-parallel
Strand 37
M
61 63anti-parallel
Strand 38
M
54 55anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
36 43first strand
Strand 2
H
49 51anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
47 56first strand
Strand 2
K
63 66anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
43 52first strand
Strand 2
L
62 66anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il