Analysis of interatomic Contacts of Structural Units in PDB entry:
4M8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M8N entry

There are 3 chains in PDB entry 4M8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 554ASN 1146
B
 GLN 553ASP 1145
C
 LYS 558PRO 756
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are143 helices in PDB entry 4M8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
554 585Right-handed alpha
Helix 2
2
A
600 610Right-handed alpha
Helix 3
3
A
615 620Right-handed 310
Helix 4
4
A
630 634Right-handed alpha
Helix 5
5
A
634 645Right-handed alpha
Helix 6
6
A
646 660Right-handed alpha
Helix 7
7
A
664 679Right-handed alpha
Helix 8
8
A
682 697Right-handed alpha
Helix 9
9
A
705 709Right-handed 310
Helix 10
10
A
716 737Right-handed alpha
Helix 11
11
A
737 753Right-handed alpha
Helix 12
12
A
810 827Right-handed alpha
Helix 13
13
A
833 837Right-handed 310
Helix 14
14
A
896 900Right-handed 310
Helix 15
15
A
902 906Right-handed alpha
Helix 16
16
A
924 928Right-handed 310
Helix 17
17
A
930 933Right-handed 310
Helix 18
18
A
934 945Right-handed alpha
Helix 19
19
A
945 957Right-handed alpha
Helix 20
20
A
959 963Right-handed 310
Helix 21
21
A
965 982Right-handed alpha
Helix 22
22
A
986 998Right-handed alpha
Helix 23
23
A
1002 1008Right-handed alpha
Helix 24
24
A
1009 1013Right-handed 310
Helix 25
25
A
1020 1037Right-handed alpha
Helix 26
26
A
1050 1055Right-handed alpha
Helix 27
27
A
1059 1077Right-handed alpha
Helix 28
28
A
1081 1097Right-handed alpha
Helix 29
29
A
1101 1114Right-handed alpha
Helix 30
30
A
1116 1126Right-handed alpha
Helix 31
31
A
1130 1146Right-handed alpha
Helix 32
32
B
554 583Right-handed alpha
Helix 33
33
B
600 610Right-handed alpha
Helix 34
34
B
615 621Right-handed 310
Helix 35
35
B
630 634Right-handed alpha
Helix 36
36
B
634 645Right-handed alpha
Helix 37
37
B
646 660Right-handed alpha
Helix 38
38
B
664 679Right-handed alpha
Helix 39
39
B
682 700Right-handed alpha
Helix 40
40
B
705 709Right-handed 310
Helix 41
41
B
715 736Right-handed alpha
Helix 42
42
B
737 753Right-handed alpha
Helix 43
43
B
810 826Right-handed alpha
Helix 44
44
B
833 837Right-handed 310
Helix 45
45
B
869 873Right-handed 310
Helix 46
46
B
896 900Right-handed 310
Helix 47
47
B
902 906Right-handed alpha
Helix 48
48
B
930 933Right-handed 310
Helix 49
49
B
934 945Right-handed alpha
Helix 50
50
B
945 958Right-handed alpha
Helix 51
51
B
959 963Right-handed 310
Helix 52
52
B
965 982Right-handed alpha
Helix 53
53
B
986 1002Right-handed alpha
Helix 54
54
B
1002 1009Right-handed alpha
Helix 55
55
B
1010 1013Right-handed 310
Helix 56
56
B
1020 1037Right-handed alpha
Helix 57
57
B
1050 1057Right-handed alpha
Helix 58
58
B
1059 1076Right-handed alpha
Helix 59
59
B
1081 1096Right-handed alpha
Helix 60
60
B
1101 1114Right-handed alpha
Helix 61
61
B
1116 1127Right-handed alpha
Helix 62
62
B
1130 1145Right-handed alpha
Helix 63
63
C
559 584Right-handed alpha
Helix 64
64
C
600 610Right-handed alpha
Helix 65
65
C
615 621Right-handed 310
Helix 66
66
C
635 646Right-handed alpha
Helix 67
67
C
646 657Right-handed alpha
Helix 68
68
C
664 679Right-handed alpha
Helix 69
69
C
682 700Right-handed alpha
Helix 70
70
C
715 729Right-handed alpha
Helix 71
71
C
729 736Right-handed alpha
Helix 72
72
C
737 755Right-handed alpha
Helix 73
73
C
810 826Right-handed alpha
Helix 74
74
C
833 837Right-handed 310
Helix 75
75
C
896 900Right-handed 310
Helix 76
76
C
931 933Right-handed 310
Helix 77
77
C
934 945Right-handed alpha
Helix 78
78
C
945 957Right-handed alpha
Helix 79
79
C
965 979Right-handed alpha
Helix 80
80
C
986 998Right-handed alpha
Helix 81
81
C
1002 1009Right-handed alpha
Helix 82
82
C
1010 1013Right-handed 310
Helix 83
83
C
1020 1037Right-handed alpha
Helix 84
84
C
1050 1056Right-handed alpha
Helix 85
85
C
1059 1077Right-handed alpha
Helix 86
86
C
1081 1095Right-handed alpha
Helix 87
87
C
1101 1114Right-handed alpha
Helix 88
88
C
1116 1127Right-handed alpha
Helix 89
89
C
1130 1145Right-handed alpha
Helix 90
90
D
559 584Right-handed alpha
Helix 91
91
D
600 610Right-handed alpha
Helix 92
92
D
615 621Right-handed 310
Helix 93
93
D
636 646Right-handed alpha
Helix 94
94
D
646 659Right-handed alpha
Helix 95
95
D
664 679Right-handed alpha
Helix 96
96
D
682 700Right-handed alpha
Helix 97
97
D
715 737Right-handed alpha
Helix 98
98
D
737 755Right-handed alpha
Helix 99
99
D
810 826Right-handed alpha
Helix 100
100
D
869 873Right-handed 310
Helix 101
101
D
896 900Right-handed 310
Helix 102
102
D
902 906Right-handed alpha
Helix 103
103
D
931 933Right-handed 310
Helix 104
104
D
934 945Right-handed alpha
Helix 105
105
D
945 957Right-handed alpha
Helix 106
106
D
959 963Right-handed 310
Helix 107
107
D
965 980Right-handed alpha
Helix 108
108
D
986 998Right-handed alpha
Helix 109
109
D
1002 1008Right-handed alpha
Helix 110
110
D
1009 1013Right-handed 310
Helix 111
111
D
1020 1037Right-handed alpha
Helix 112
112
D
1050 1057Right-handed alpha
Helix 113
113
D
1059 1076Right-handed alpha
Helix 114
114
D
1081 1095Right-handed alpha
Helix 115
115
D
1101 1114Right-handed alpha
Helix 116
116
D
1116 1125Right-handed alpha
Helix 117
117
D
1130 1145Right-handed alpha
Helix 118
118
E
15 25Right-handed alpha
Helix 119
119
E
67 75Right-handed alpha
Helix 120
120
E
86 92Right-handed alpha
Helix 121
121
E
92 105Right-handed alpha
Helix 122
122
E
120 124Right-handed 310
Helix 123
123
E
127 138Right-handed alpha
Helix 124
124
E
154 166Right-handed alpha
Helix 125
125
F
15 25Right-handed alpha
Helix 126
126
F
67 75Right-handed alpha
Helix 127
127
F
87 92Right-handed alpha
Helix 128
128
F
92 105Right-handed alpha
Helix 129
129
F
120 124Right-handed 310
Helix 130
130
F
127 138Right-handed alpha
Helix 131
131
F
153 167Right-handed alpha
Helix 132
132
G
15 25Right-handed alpha
Helix 133
133
G
69 75Right-handed alpha
Helix 134
134
G
86 92Right-handed alpha
Helix 135
135
G
92 105Right-handed alpha
Helix 136
136
G
127 137Right-handed alpha
Helix 137
137
G
155 166Right-handed alpha
Helix 138
138
H
15 25Right-handed alpha
Helix 139
139
H
69 75Right-handed alpha
Helix 140
140
H
87 92Right-handed alpha
Helix 141
141
H
93 105Right-handed alpha
Helix 142
142
H
127 138Right-handed alpha
Helix 143
143
H
153 167Right-handed alpha
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There are 14 sheets in PDB entry 4M8N. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
802 806first strand
Strand 2
A
782 789anti-parallel
Strand 3
A
878 883parallel
Strand 4
A
838 842anti-parallel
Strand 5
A
847 850anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
859 860first strand
Strand 2
A
863 865anti-parallel
Strand 3
A
907 908parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
800 806first strand
Strand 2
B
782 789anti-parallel
Strand 3
B
879 883parallel
Strand 4
B
838 842anti-parallel
Strand 5
B
847 849anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
859 860first strand
Strand 2
B
863 865anti-parallel
Strand 3
B
907 908parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
800 806first strand
Strand 2
C
782 789anti-parallel
Strand 3
C
879 883parallel
Strand 4
C
838 842anti-parallel
Strand 5
C
847 849anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
864 865first strand
Strand 2
C
907 908parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
801 805first strand
Strand 2
D
783 789anti-parallel
Strand 3
D
879 883parallel
Strand 4
D
838 842anti-parallel
Strand 5
D
847 849anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
864 865first strand
Strand 2
D
907 908parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 39first strand
Strand 2
E
49 57anti-parallel
Strand 3
E
42 46anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 39first strand
Strand 2
E
49 57anti-parallel
Strand 3
E
3 8parallel
Strand 4
E
77 83parallel
Strand 5
E
111 116parallel
Strand 6
E
142 145parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
38 46first strand
Strand 2
F
49 57anti-parallel
Strand 3
F
3 10parallel
Strand 4
F
77 83parallel
Strand 5
F
111 116parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
38 46first strand
Strand 2
G
49 57anti-parallel
Strand 3
G
3 10parallel
Strand 4
G
77 83parallel
Strand 5
G
112 116parallel
Strand 6
G
142 144parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
38 39first strand
Strand 2
H
49 57anti-parallel
Strand 3
H
42 46anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
38 39first strand
Strand 2
H
49 57anti-parallel
Strand 3
H
3 10parallel
Strand 4
H
77 83parallel
Strand 5
H
111 116parallel
Strand 6
H
142 143parallel
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